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ZIRC
ZFIN ID: ZDB-GENE-040426-803
Gene Name: very low density lipoprotein receptor
Gene Symbol: vldlr    Nomenclature History

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Previous Names: lr8 (1), zgc:55792

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 10 Mapping Details/Browsers
Description: Predicted to have calcium ion binding activity and very-low-density lipoprotein particle receptor activity. Predicted to localize to the integral component of membrane. Human ortholog(s) of this gene implicated in Alzheimer's disease; cerebellar ataxia, mental retardation and dysequlibrium syndrome; and dementia. Is expressed in several structures, including axis; brain; pronephric duct; retinal ganglion cell layer; and spinal cord interneuron. Orthologous to human VLDLR (very low density lipoprotein receptor).
Genome Resources: Alliance (1),  Gene:393897 (1),  Ensembl(GRCz11):ENSDARG00000006257 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
ic3030 Insertion Unknown Unknown CRISPR
sa14068 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa17714 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa38785 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • tud25Gt Transgenic Insertion Intron 2 Unknown DNA
  • European Zebrafish Resource Center (EZRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-vldlr 1
    DISEASE ASSOCIATED WITH vldlr HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    cerebellar ataxia, mental retardation and dysequlibrium syndrome Alliance Cerebellar hypoplasia and mental retardation with or without quadrupedal locomotion 1 224050
    DISEASE ASSOCIATED WITH vldlr VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component integral component of membrane (more)
    Molecular Function calcium ion binding (more)
    GO Terms (all 4)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA vldlr-203 (1)    Ensembl 3496
    ncRNA vldlr-002 (1) 921
    vldlr-003 (1) 752
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM vldlr No data available
    MARKER RELATIONSHIPS
    vldlr Contained in: [BAC] CH211-241O7 (1) (order this)
    vldlr Encodes: [cDNA] MGC:55792 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200923 (1) 3751 bp
    Genomic GenBank:CR628386 (1) 148044 bp
    Select Tool
    Polypeptide UniProtKB:E7FF13 (1) 866 aa
    Sequence Clusters UniGene:82354 (1)
    Sequence Information (all 22)
    ORTHOLOGY for vldlr ( Chr: 10 )
    CITATIONS (27)