ZFIN is now using GRCz12tu for Genomic Data
Gene
trim25
- ID
- ZDB-GENE-040426-797
- Name
- tripartite motif containing 25
- Symbol
- trim25 Nomenclature History
- Previous Names
-
- zgc:55773 (1)
- Type
- protein_coding_gene
- Location
- Chr: 6 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable ligase activity and zinc ion binding activity. Acts upstream of or within regulation of RIG-I signaling pathway. Predicted to be located in cytoplasm. Is expressed in several structures, including gill; integument; male organism; muscle; and pleuroperitoneal region. Orthologous to human TRIM25 (tripartite motif containing 25).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 2 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:55773 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR017907 | Zinc finger, RING-type, conserved site |
| Domain | IPR000315 | B-box-type zinc finger |
| Domain | IPR001841 | Zinc finger, RING-type |
| Domain | IPR001870 | B30.2/SPRY domain |
| Domain | IPR003877 | SPRY domain |
| Domain | IPR003879 | Butyrophylin-like, SPRY domain |
| Domain | IPR006574 | SPRY-associated |
| Domain | IPR027370 | Zinc finger, RING-type, eukaryotic |
| Family | IPR051051 | E3 ubiquitin-protein ligase TRIM/RNF |
| Homologous_superfamily | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| Homologous_superfamily | IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily |
| Homologous_superfamily | IPR043136 | B30.2/SPRY domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | B30.2/SPRY domain | B30.2/SPRY domain superfamily | B-box-type zinc finger | Butyrophylin-like, SPRY domain | Concanavalin A-like lectin/glucanase domain superfamily | E3 ubiquitin-protein ligase TRIM/RNF | SPRY-associated | SPRY domain | Zinc finger, RING/FYVE/PHD-type | Zinc finger, RING-type | Zinc finger, RING-type, conserved site | Zinc finger, RING-type, eukaryotic |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:Q7ZVQ7 | InterPro | 654 | ||||||||||||
| UniProtKB:A0A2R8QTG3 | InterPro | 645 | ||||||||||||
| UniProtKB:A0AB32TWP9 | InterPro | 654 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
trim25-201
(1)
|
Ensembl | 3,101 nt | ||
| mRNA |
trim25-202
(1)
|
Ensembl | 859 nt | ||
| mRNA |
trim25-204
(1)
|
Ensembl | 1,938 nt | ||
| ncRNA |
trim25-003
(1)
|
Ensembl | 921 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers