ZFIN is now using GRCz12tu for Genomic Data

Gene

slc25a55a

ID

ZDB-GENE-040426-2745

Name

solute carrier family 25 member 55a

Symbol

slc25a55a Nomenclature History

Previous Names

cb229 (1)
slc25a22 (1)
sb:cb229
wu:fa12h05
wu:fb72h03
zgc:56592

Type

protein_coding_gene

Location

Chr: 6 Mapping Details/Browsers

Genome Assembly

GRCz12tu

Annotation Status

Current

Description

Predicted to enable L-aspartate transmembrane transporter activity and L-glutamate transmembrane transporter activity. Predicted to be involved in L-glutamate transmembrane transport; aspartate transmembrane transport; and malate-aspartate shuttle. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane and mitochondrion. Predicted to be active in mitochondrial inner membrane. Is expressed in several structures, including EVL; epidermis; mesoderm; nervous system; and periderm. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 3. Orthologous to human SLC25A22 (solute carrier family 25 member 22).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

8 figures from 3 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

cb229 (11 images)
IMAGE:6905630 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With slc25a55a Human Ortholog

No data available

Associated With slc25a55a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR002067	Mitochondrial carrier protein
Family	IPR051028	Mitochondrial Solute Carrier

Domain Details Per Protein

Protein	Additional Resources	Length
UniProtKB:A0A8M2BJZ1	InterPro	224
UniProtKB:Q7ZTT6	InterPro	329
UniProtKB:A0AC58JQW6	InterPro	224
UniProtKB:A0AC58JQX0	InterPro	224
UniProtKB:A0AC58JQY0	InterPro	224
UniProtKB:A0AC58JQY1	InterPro	224

Transcripts

Genome Browsers

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	slc25a55a-201 (1) Ensembl	Ensembl	2,627 nt	Select Tool ZFIN BLAST
ncRNA	slc25a22-002 (1) Ensembl	Ensembl	803 nt	Select Tool ZFIN BLAST
ncRNA	slc25a22-003 (1) Ensembl	Ensembl	639 nt	Select Tool ZFIN BLAST
ncRNA	slc25a22-004 (1) Ensembl	Ensembl	796 nt	Select Tool ZFIN BLAST
ncRNA	slc25a22-005 (1) Ensembl	Ensembl	505 nt	Select Tool ZFIN BLAST
ncRNA	slc25a22-006 (1) Ensembl	Ensembl	837 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Genome Browsers

NCBI Map Viewer

ZFIN

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations