ZFIN is now using GRCz12tu for Genomic Data
Gene
tomm20a
- ID
- ZDB-GENE-040426-1976
- Name
- translocase of outer mitochondrial membrane 20
- Symbol
- tomm20a Nomenclature History
- Previous Names
-
- arid4b
- ch1073-321c8.1
- wu:fk47b11
- Type
- protein_coding_gene
- Location
- Chr: 13 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; midbrain; and segmental plate. Orthologous to human TOMM20 (translocase of outer mitochondrial membrane 20).
- Genome Resources
- Note
-
Two genes, arid4b and tomm20a shared one gene record. On 2016-06-07, the sequences were separated and gene names updated.
- Comparative Information
-
- All Expression Data
- 6 figures from Thisse et al., 2004
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:73165 (8 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR001606 | ARID DNA-binding domain |
| Domain | IPR002999 | Tudor domain |
| Domain | IPR012603 | ARID4A/B, PWWP domain |
| Domain | IPR025995 | RNA binding activity-knot of a chromodomain |
| Domain | IPR028853 | ARID4B, ARID/BRIGHT domain |
| Family | IPR002056 | Protein import receptor MAS20 |
| Family | IPR022422 | Protein import receptor MAS20, metazoan |
| Family | IPR051232 | AT-rich Interactive Domain/SWI1 Chromatin Remodeling |
| Homologous_superfamily | IPR016197 | Chromo-like domain superfamily |
| Homologous_superfamily | IPR023392 | Mitochondrial outer membrane translocase complex, Tom20 domain superfamily |
| Homologous_superfamily | IPR036431 | ARID DNA-binding domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | ARID4A/B, PWWP domain | ARID4B, ARID/BRIGHT domain | ARID DNA-binding domain | ARID DNA-binding domain superfamily | AT-rich Interactive Domain/SWI1 Chromatin Remodeling | Chromo-like domain superfamily | Mitochondrial outer membrane translocase complex, Tom20 domain superfamily | Protein import receptor MAS20 | Protein import receptor MAS20, metazoan | RNA binding activity-knot of a chromodomain | Tudor domain |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:F1R2N8 | InterPro | 1239 | |||||||||||
| UniProtKB:Q6PC05 | InterPro | 145 | |||||||||||
| UniProtKB:A0AB40ED33 | InterPro | 146 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
tomm20a-204
(1)
|
Ensembl | 1,095 nt | ||
| mRNA |
tomm20a-205
(1)
|
Ensembl | 5,366 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers