ZFIN is now using GRCz12tu for Genomic Data
Gene
sema6ca
- ID
- ZDB-GENE-040426-1933
- Name
- sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Ca
- Symbol
- sema6ca Nomenclature History
- Previous Names
-
- sema6d
- wu:fi06a12
- wu:fi76a10
- zgc:56170
- Type
- protein_coding_gene
- Location
- Chr: 19 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Acts upstream of or within axonogenesis and branching involved in blood vessel morphogenesis. Predicted to be located in extracellular region and membrane. Predicted to be active in plasma membrane. Is expressed in blood vessel; central nervous system; neural rod; optic vesicle; and retina. Orthologous to human SEMA6C (semaphorin 6C).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 5 figures from 3 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:7136041 (1 image)
- MGC:56170 (2 images)
Wild Type Expression Summary
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Sema domain | Sema domain superfamily | Semaphorin | WD40/YVTN repeat-like-containing domain superfamily |
|---|---|---|---|---|---|---|
| UniProtKB:B8JMB1 | InterPro | 898 | ||||
| UniProtKB:A0AB32T827 | InterPro | 934 | ||||
| UniProtKB:A0AB32TD15 | InterPro | 880 | ||||
| UniProtKB:A0AC58HXW0 | InterPro | 880 | ||||
| UniProtKB:A0AC58HXW4 | InterPro | 910 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
sema6d-201
(1)
|
Ensembl | 3,378 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers