Gene

srsf7a

ID

ZDB-GENE-040426-1798

Name

serine and arginine rich splicing factor 7a

Symbol

srsf7a Nomenclature History

Previous Names

fb39b02
wu:fb39b02
zgc:77155

Type

protein_coding_gene

Location

Chr: 5 Mapping Details/Browsers

Description

Predicted to have RNA binding activity. Predicted to be involved in mRNA cis splicing, via spliceosome and regulation of alternative mRNA splicing, via spliceosome. Predicted to localize to nuclear speck. Orthologous to human SRSF7 (serine and arginine rich splicing factor 7).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from 2 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:77155 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With srsf7a Human Ortholog

No data available

Associated With srsf7a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR001878	Zinc finger, CCHC-type
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily
Homologous_superfamily	IPR036875	Zinc finger, CCHC-type superfamily

Domain Details Per Protein

Protein	Length	Nucleotide-binding alpha-beta plait domain superfamily	RNA-binding domain superfamily	RNA recognition motif domain	Zinc finger, CCHC-type	Zinc finger, CCHC-type superfamily
UniProtKB:A0A8M2BCK1 InterPro	171
UniProtKB:A2BHB2 InterPro	245
UniProtKB:Q6P0K2 InterPro	258

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	srsf7a-211 (1) Ensembl	Ensembl	724 nt	Select Tool
mRNA	srsf7a-201 (1) Ensembl	Ensembl	1,407 nt	Select Tool
mRNA	srsf7a-204 (1) Ensembl	Ensembl	952 nt	Select Tool
mRNA	srsf7a-205 (1) Ensembl	Ensembl	873 nt	Select Tool
mRNA	srsf7a-206 (1) Ensembl	Ensembl	1,465 nt	Select Tool
mRNA	srsf7a-207 (1) Ensembl	Ensembl	501 nt	Select Tool
mRNA	srsf7a-208 (1) Ensembl	Ensembl	851 nt	Select Tool
mRNA	srsf7a-209 (1) Ensembl	Ensembl	745 nt	Select Tool
mRNA	srsf7a-210 (1) Ensembl	Ensembl	859 nt	Select Tool
mRNA	srsf7a-212 (1) Ensembl	Ensembl	778 nt	Select Tool
ncRNA	srsf7a-006 (1) Ensembl	Ensembl	516 nt	Select Tool
ncRNA	srsf7a-007 (1) Ensembl	Ensembl	849 nt	Select Tool
ncRNA	srsf7a-012 (1) Ensembl	Ensembl	875 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations