Gene

edf1

ID

ZDB-GENE-040426-1710

Name

endothelial differentiation-related factor 1

Symbol

edf1 Nomenclature History

Previous Names

zgc:73192
zgc:86829

Type

protein_coding_gene

Location

Chr: 5 Mapping Details/Browsers

Description

Predicted to have DNA binding activity. Predicted to localize to nucleus. Orthologous to human EDF1 (endothelial differentiation related factor 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:73192 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With edf1 Human Ortholog

No data available

Associated With edf1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001387	Cro/C1-type helix-turn-helix domain
Domain	IPR013729	Multiprotein bridging factor 1, N-terminal
Homologous_superfamily	IPR010982	Lambda repressor-like, DNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	Cro/C1-type helix-turn-helix domain	Lambda repressor-like, DNA-binding domain superfamily	Multiprotein bridging factor 1, N-terminal
UniProtKB:Q6PBY3 InterPro	146
UniProtKB:A5PN46 InterPro	146

Transcripts

Genome Browsers

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	edf1-201 (1) Ensembl	Ensembl		1,041 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations