ZFIN ID: ZDB-GENE-040426-17
Gene Name: jumonji domain containing 6, arginine demethylase and lysine hydroxylase
Gene Symbol: jmjd6    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: jmjd6a (1), psr (1), ptdsr (1), zfpsr (1), zgc:66264

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 3 Mapping Details/Browsers
Description: Predicted to have histone demethylase activity; peptidyl-lysine 5-dioxygenase activity; and single-stranded RNA binding activity. Involved in phagocytosis. Predicted to localize to cytoplasm; nucleolus; and nucleoplasm. Is expressed in brain; hatching gland; heart; pronephros; and somite. Orthologous to human JMJD6 (jumonji domain containing 6, arginine demethylase and lysine hydroxylase).
Genome Resources: Alliance (1),  Gene:266962 (1),  Ensembl(GRCz11):ENSDARG00000102896 (1)
GENE EXPRESSION
All Expression Data: 6 figures from 4 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7151542]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
High Throughput Expression: GEO (1) Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa33340 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-jmjd6 N/A 1
    MO2-jmjd6 N/A 1
    DISEASE ASSOCIATED WITH jmjd6 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH jmjd6 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process phagocytosis (more)
    Cellular Component cytoplasm (more)
    Molecular Function histone demethylase activity (H3-R2 specific) (more)
    GO Terms (all 23)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA jmjd6-201 (1)    Ensembl 1523
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM jmjd6
    Construct Regulatory Regions Coding Sequences Species Tg Lines Publications
    tg(5xuas:egfp-jmjd6,myl7:egfp) myl7UAS EGFPjmjd6 Danio rerio 1 1
    MARKER RELATIONSHIPS
    jmjd6 Contained in: [BAC] CH73-366L1 (1)
    jmjd6 Encodes: [EST] IMAGE:7151542 (1)
    [cDNA] MGC:66264 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_170761 (1) 3142 nt
    Genomic GenBank:CU463857 (1) 96746 nt
    Select Tool
    Polypeptide UniProtKB:Q6PFM0 (1) 403 aa
    Sequence Information (all 15)
    ORTHOLOGY for jmjd6 ( Chr: 3 )
    CITATIONS (30)