Gene

sri

ID

ZDB-GENE-040426-1356

Name

sorcin

Symbol

sri Nomenclature History

Previous Names

zgc:64070

Type

protein_coding_gene

Location

Chr: 16 Mapping Details/Browsers

Description

Predicted to have calcium ion binding activity. Is expressed in epidermis; head mesenchyme; mucus secreting cell; periderm; and pronephric duct. Orthologous to human SRI (sorcin).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

4 figures from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:64070 (7 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With sri Human Ortholog

No data available

Associated With sri Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Binding_site	IPR018247	EF-Hand 1, calcium-binding site
Domain	IPR002048	EF-hand domain
Homologous_superfamily	IPR011992	EF-hand domain pair

Domain Details Per Protein

Protein	Length	EF-Hand 1, calcium-binding site	EF-hand domain	EF-hand domain pair
UniProtKB:F1R4I7 InterPro	190
UniProtKB:Q7T365 InterPro	169

Transcripts

Genome Browsers

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	sri-201 (1) Ensembl	Ensembl		1,577 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations