Gene

cnot4b

ID

ZDB-GENE-040426-1164

Name

CCR4-NOT transcription complex, subunit 4b

Symbol

cnot4b Nomenclature History

Previous Names

zgc:63566

Type

protein_coding_gene

Location

Chr: 4 Mapping Details/Browsers

Description

Predicted to have ubiquitin-protein transferase activity. Predicted to be involved in protein ubiquitination. Predicted to localize to CCR4-NOT complex. Orthologous to human CNOT4 (CCR4-NOT transcription complex subunit 4).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With cnot4b Human Ortholog

No data available

Associated With cnot4b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR000571	Zinc finger, CCCH-type
Domain	IPR001841	Zinc finger, RING-type
Domain	IPR003954	RNA recognition motif domain, eukaryote
Domain	IPR034261	CNOT4, RNA recognition motif
Domain	IPR039515	NOT4, modified RING finger, HC subclass (C4C4-type)
Family	IPR039780	CCR4-NOT transcription complex subunit 4
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR013083	Zinc finger, RING/FYVE/PHD-type
Homologous_superfamily	IPR035979	RNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	CCR4-NOT transcription complex subunit 4	CNOT4, RNA recognition motif	NOT4, modified RING finger, HC subclass (C4C4-type)	Nucleotide-binding alpha-beta plait domain superfamily	RNA-binding domain superfamily	RNA recognition motif domain	RNA recognition motif domain, eukaryote	Zinc finger, CCCH-type	Zinc finger, RING/FYVE/PHD-type	Zinc finger, RING-type
UniProtKB:Q7SYD1 InterPro	798

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	cnot4b-201 (1) Ensembl	Havana	4317 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	cnot4b-002 (1) Ensembl	Havana	808 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations