Gene

ubtfl

ID

ZDB-GENE-040426-1159

Name

upstream binding transcription factor, like

Symbol

ubtfl Nomenclature History

Previous Names

zgc:63557 (1)

Type

protein_coding_gene

Location

Chr: 2 Mapping Details/Browsers

Description

Predicted to have DNA binding activity. Predicted to localize to nucleus. Is expressed in adaxial cell; cephalic musculature; hypaxial myotome region; myotome; and pectoral fin musculature. Orthologous to human UBTF (upstream binding transcription factor).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

9 figures from 2 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:63557 (10 images)
IMAGE:7160265 (1 image)
IMAGE:7162689 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With ubtfl Human Ortholog

No data available

Associated With ubtfl Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR009071	High mobility group box domain
Domain	IPR029215	High mobility group box domain 5
Family	IPR051762	Upstream Binding Factor 1
Homologous_superfamily	IPR036910	High mobility group box domain superfamily

Domain Details Per Protein

Protein	Length	High mobility group box domain	High mobility group box domain 5	High mobility group box domain superfamily	Upstream Binding Factor 1
UniProtKB:A0A8M2BAL3 InterPro	714
UniProtKB:A0A8M3APU0 InterPro	718
UniProtKB:B0S7C3 InterPro	719
UniProtKB:A0A8M3B7S2 InterPro	718
UniProtKB:A0A8M2BAY0 InterPro	713
UniProtKB:A0A8M2BAP6 InterPro	690
UniProtKB:A0A8M3AQA2 InterPro	696
UniProtKB:A0A8M2BAL7 InterPro	697
UniProtKB:Q7SY36 InterPro	719

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	ubtfl-201 (1) Ensembl	Ensembl	2,861 nt	Select Tool
mRNA	ubtfl-202 (1) Ensembl	Ensembl	265 nt	Select Tool
mRNA	ubtfl-204 (1) Ensembl	Ensembl	780 nt	Select Tool
mRNA	ubtfl-206 (1) Ensembl	Ensembl	1,898 nt	Select Tool
mRNA	ubtfl-207 (1) Ensembl	Ensembl	666 nt	Select Tool
mRNA	ubtfl-208 (1) Ensembl	Ensembl	523 nt	Select Tool
mRNA	ubtfl-210 (1) Ensembl	Ensembl	678 nt	Select Tool
mRNA	ubtfl-211 (1) Ensembl	Ensembl	3,184 nt	Select Tool ZFIN BLAST
ncRNA	ubtfl-005 (1) Ensembl	Ensembl	757 nt	Select Tool
ncRNA	ubtfl-006 (1) Ensembl	Ensembl	700 nt	Select Tool
ncRNA	ubtfl-007 (1) Ensembl	Ensembl	423 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations