Gene

lmcd1

ID

ZDB-GENE-040426-1067

Name

LIM and cysteine-rich domains 1

Symbol

lmcd1 Nomenclature History

Previous Names

zgc:56533 (1)

Type

protein_coding_gene

Location

Chr: 22 Mapping Details/Browsers

Description

Predicted to enable zinc ion binding activity. Predicted to be located in cytoplasm. Is expressed in cardiac ventricle and myocardium. Orthologous to human LMCD1 (LIM and cysteine rich domains 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from 2 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:56533 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 1 Figure from Dina et al., 2015
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With lmcd1 Human Ortholog

No data available

Associated With lmcd1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001781	Zinc finger, LIM-type
Domain	IPR010442	PET domain
Domain	IPR033724	PET testin
Family	IPR047120	Prickle/Espinas/Testin

Domain Details Per Protein

Protein	Additional Resources	Length	PET domain	PET testin	Prickle/Espinas/Testin	Zinc finger, LIM-type
UniProtKB:A0A8M3AMI6	InterPro	281
UniProtKB:E7FCK0	InterPro	342

Transcripts

Genome Browsers

NCBI

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	lmcd1-201 (1) Ensembl	Ensembl		797 nt	Select Tool ZFIN BLAST
mRNA	lmcd1-202 (1) Ensembl	Ensembl		1,453 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations