Gene

ssrp1a

ID

ZDB-GENE-031118-9

Name

structure specific recognition protein 1a

Symbol

ssrp1a Nomenclature History

Previous Names

ssrp1
wu:fa11b03
wu:fd10f06

Type

protein_coding_gene

Location

Chr: 14 Mapping Details/Browsers

Description

Predicted to have histone binding activity and nucleosome binding activity. Involved in regulation of cell cycle. Predicted to localize to FACT complex and nuclear chromatin. Is expressed in eye; liver; and pectoral fin. Orthologous to human SSRP1 (structure specific recognition protein 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

4 figures from 4 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

MGC:66086 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 7 figures from 2 publications
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With ssrp1a Human Ortholog

No data available

Associated With ssrp1a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR009071	High mobility group box domain
Domain	IPR013719	Histone chaperone RTT106/FACT complex subunit SPT16-like, middle domain
Domain	IPR024954	SSRP1, dimerization domain
Domain	IPR035417	FACT complex subunit SSRP1/POB3, N-terminal PH domain
Domain	IPR048985	FACT complex subunit SSRP1, C-terminal domain
Domain	IPR048993	FACT complex subunit SSRP1-like, first PH domain
Family	IPR000969	FACT complex subunit SSRP1/POB3
Homologous_superfamily	IPR011993	PH-like domain superfamily
Homologous_superfamily	IPR036910	High mobility group box domain superfamily
Homologous_superfamily	IPR038167	SSRP1 domain superfamily

Domain Details Per Protein

Protein	Length	FACT complex subunit SSRP1, C-terminal domain	FACT complex subunit SSRP1-like, first PH domain	FACT complex subunit SSRP1/POB3	FACT complex subunit SSRP1/POB3, N-terminal PH domain	High mobility group box domain	High mobility group box domain superfamily	Histone chaperone RTT106/FACT complex subunit SPT16-like, middle domain	PH-like domain superfamily	SSRP1, dimerization domain	SSRP1 domain superfamily
UniProtKB:F1QEB4 InterPro	705

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	ssrp1a-201 (1) Ensembl	Havana	2593 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	ssrp1a-202 (1) Ensembl	Havana	561 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations