Gene

snx9b

ID

ZDB-GENE-031118-50

Name

sorting nexin 9b

Symbol

snx9b Nomenclature History

Previous Names

snx9l
si:dkeyp-70e6.2
wu:fj22c06 (1)
wu:fj94b09 (1)
wu:fk76d01

Type

protein_coding_gene

Location

Chr: 20 Mapping Details/Browsers

Description

Predicted to enable phosphatidylinositol binding activity. Predicted to be involved in several processes, including cleavage furrow formation; endosomal transport; and plasma membrane tubulation. Predicted to act upstream of or within intracellular protein transport and mitotic cytokinesis. Predicted to be located in cytoplasmic vesicle membrane. Predicted to be active in cytoplasmic vesicle and plasma membrane. Orthologous to human SNX9 (sorting nexin 9).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7138434 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With snx9b Human Ortholog

No data available

Associated With snx9b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001452	SH3 domain
Domain	IPR001683	Phox homology
Domain	IPR019497	Sorting nexin protein, WASP-binding domain
Domain	IPR035558	SNX9, SH3 domain
Domain	IPR037425	Sorting nexin-9, BAR domain
Domain	IPR037426	Sorting nexin-9, PX domain
Family	IPR014536	Sorting nexin 9 family
Homologous_superfamily	IPR027267	AH/BAR domain superfamily
Homologous_superfamily	IPR036028	SH3-like domain superfamily
Homologous_superfamily	IPR036871	PX domain superfamily

Domain Details Per Protein

Protein	Length	AH/BAR domain superfamily	Phox homology	PX domain superfamily	SH3 domain	SH3-like domain superfamily	SNX9, SH3 domain	Sorting nexin-9, BAR domain	Sorting nexin 9 family	Sorting nexin-9, PX domain	Sorting nexin protein, WASP-binding domain
UniProtKB:A0A8M9PBT0 InterPro	620
UniProtKB:Q5SPP2 InterPro	581
UniProtKB:A0A8M2BI00 InterPro	608
UniProtKB:A0A8M9PHD2 InterPro	593

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	snx9b-201 (1) Ensembl	Ensembl	2,965 nt	Select Tool ZFIN BLAST
mRNA	snx9b-202 (1) Ensembl	Ensembl	2,799 nt	Select Tool ZFIN BLAST
ncRNA	snx9b-003 (1) Ensembl	Ensembl	494 nt	Select Tool ZFIN BLAST
ncRNA	snx9b-004 (1) Ensembl	Ensembl	389 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations