Gene

rtn1b

ID

ZDB-GENE-030710-3

Name

reticulon 1b

Symbol

rtn1b Nomenclature History

Previous Names

rtn1
rtn1l
wu:fa21b09 (1)
wu:fj35h01 (1)

Type

protein_coding_gene

Location

Chr: 20 Mapping Details/Browsers

Description

Predicted to localize to endoplasmic reticulum; endoplasmic reticulum membrane; and integral component of membrane. Is expressed in central nervous system; eye; gill; heart; and muscle. Orthologous to human RTN1 (reticulon 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

5 figures from 2 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:6903043 (8 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rtn1b Human Ortholog

No data available

Associated With rtn1b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR003388	Reticulon
Family	IPR046964	Reticulon 1-4

Domain Details Per Protein

Protein	Length	Reticulon	Reticulon 1-4
UniProtKB:Q4G5W6 InterPro	262
UniProtKB:Q5TZI1 InterPro	212
UniProtKB:F1R540 InterPro	767
UniProtKB:A0A8M2B7D0 InterPro	766

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	rtn1b-201 (1) Ensembl	Ensembl	1,836 nt	Select Tool
mRNA	rtn1b-202 (1) Ensembl	Ensembl	3,525 nt	Select Tool
mRNA	rtn1b-203 (1) Ensembl	Ensembl	2,011 nt	Select Tool ZFIN BLAST
mRNA	rtn1b-205 (1) Ensembl	Ensembl	5,671 nt	Select Tool ZFIN BLAST
ncRNA	rtn1b-003 (1) Ensembl	Ensembl	823 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations