ZFIN ID: ZDB-GENE-030616-253
Gene Name: ataxin 7-like 3
Gene Symbol: atxn7l3    Nomenclature History

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Previous Names: si:busm1-180g5.4, si:dz180g5.4, wu:fj12f07, zgc:136438, zgc:158566

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 3 Mapping Details/Browsers
Description: Predicted to have transcription coactivator activity. Predicted to be involved in histone deubiquitination and positive regulation of transcription, DNA-templated. Predicted to localize to DUBm complex and SAGA complex. Orthologous to human ATXN7L3 (ataxin 7 like 3).
Genome Resources: Alliance (1),  Gene:368510 (1),  Ensembl(GRCz11):ENSDARG00000029331 (2)
GENE EXPRESSION
All Expression Data: Fig. S1 from Yanicostas et al., 2012
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
High Throughput Expression: GEO (1) Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la011095Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la015107Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la028871Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa9492 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH atxn7l3 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH atxn7l3 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process positive regulation of transcription, DNA-templated (more)
    Cellular Component SAGA complex (more)
    Molecular Function transcription coactivator activity (more)
    GO Terms (all 10)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA atxn7l3-001 (1) 1985
    Browsers: NCBI
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM atxn7l3 No data available
    MARKER RELATIONSHIPS
    atxn7l3 Contained in: [BAC] DKEY-15K2 (1) (order this), DKEY-267L2 (1) (order this)
    [PAC] BUSM1-180G5 (1)
    atxn7l3 Encodes: [EST] fj12f07
    [cDNA] MGC:136438 (1), MGC:158566 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001040341 (1) 2261 nt
    Genomic GenBank:CR855865 (1) 149895 nt
    Select Tool
    Polypeptide UniProtKB:A1L209 (1) 367 aa
    Sequence Information (all 25)
    ORTHOLOGY for atxn7l3 ( Chr: 3 )
    CITATIONS (29)