ZFIN is now using GRCz12tu for Genomic Data
Gene
bmal1b
- ID
- ZDB-GENE-030408-1
- Name
- basic helix-loop-helix ARNT like 1b
- Symbol
- bmal1b Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 7 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Enables chromatin binding activity. Contributes to DNA binding activity. Acts upstream of or within photoperiodism and positive regulation of gene expression. Located in chromatin. Part of CLOCK-BMAL transcription complex. Is expressed in brain; heart; liver; muscle; and retina. Human ortholog(s) of this gene implicated in alcohol dependence and bipolar disorder. Orthologous to human BMAL1 (basic helix-loop-helix ARNT like 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 12 figures from 9 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000014 | PAS domain |
| Domain | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Domain | IPR013767 | PAS fold |
| Family | IPR001067 | Nuclear translocator |
| Family | IPR050933 | Circadian Clock Transcription Factors |
| Homologous_superfamily | IPR035965 | PAS domain superfamily |
| Homologous_superfamily | IPR036638 | Helix-loop-helix DNA-binding domain superfamily |
| Repeat | IPR001610 | PAC motif |
Domain Details Per Protein
| Protein | Additional Resources | Length | Circadian Clock Transcription Factors | Helix-loop-helix DNA-binding domain superfamily | Myc-type, basic helix-loop-helix (bHLH) domain | Nuclear translocator | PAC motif | PAS domain | PAS domain superfamily | PAS fold |
|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M9PNL9 | InterPro | 671 | ||||||||
| UniProtKB:A0A8M3BBD8 | InterPro | 653 | ||||||||
| UniProtKB:Q8JIG1 | InterPro | 622 | ||||||||
| UniProtKB:A0A8M2BE61 | InterPro | 676 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
arntl1b-201
(1)
|
Ensembl | 2,400 nt | ||
| mRNA |
arntl1b-203
(1)
|
Ensembl | 1,869 nt | ||
| ncRNA |
arntl1b-003
(1)
|
Ensembl | 1,210 nt | ||
| ncRNA |
arntl1b-004
(1)
|
Ensembl | 815 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers