Gene

sem1

ID
ZDB-GENE-030131-988
Name
SEM1 26S proteasome subunit
Symbol
sem1 Nomenclature History
Previous Names
  • shfm1 (1)
  • wu:fb55c02
  • zgc:85901
Type
protein_coding_gene
Location
Chr: 19 Mapping Details/Browsers
Description
Predicted to be involved in double-strand break repair via homologous recombination. Predicted to be located in nucleus. Predicted to be part of proteasome complex. Orthologous to human SEM1 (SEM1 26S proteasome subunit).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Thisse et al., 2004
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
1 Figure from Shin et al., 2021
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
kh46Allele with one deletionUnknownFrameshiftCRISPR
1 - 1 of 1
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Sequence Targeting Reagents
Targeting Reagent Created Alleles Citations
CRISPR1-sem1Shin et al., 2021
1 - 1 of 1
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Human Disease
Associated With sem1 Human Ortholog
No data available
Associated With sem1 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Family IPR007834 DSS1/SEM1
1 - 1 of 1
Domain Details Per Protein
Protein Additional Resources Length DSS1/SEM1
UniProtKB:Q7ZU84 InterPro 70
1 - 1 of 1
Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 19
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA sem1-201 (1) Ensembl 1,475 nt
mRNA sem1-202 (1) Ensembl 644 nt
mRNA sem1-203 (1) Ensembl 358 nt
1 - 3 of 3
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inFosmidCH1073-274G5ZFIN Curated Data
EncodesESTfb55c02
EncodescDNAMGC:56203ZFIN Curated Data
EncodescDNAMGC:85901ZFIN Curated Data
1 - 4 of 4
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Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanSEM17
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
MouseSem16
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
Citations
1 - 4 of 4
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