Gene

ppp1r13ba

ID

ZDB-GENE-030131-9805

Name

protein phosphatase 1, regulatory subunit 13Ba

Symbol

ppp1r13ba Nomenclature History

Previous Names

cb375 (1)
fc63g02
fc76b12
sb:cb375 (1)
si:ch73-9j13.1 (1)
wu:fa02c01
wu:fb69g10
wu:fc63g02
wu:fc76b12

Type

protein_coding_gene

Location

Chr: 17 Mapping Details/Browsers

Description

Predicted to enable p53 binding activity. Predicted to act upstream of or within regulation of apoptotic process. Predicted to be active in nucleus. Is expressed in several structures, including cardiovascular system; hematopoietic system; musculature system; nervous system; and neural tube. Orthologous to human PPP1R13B (protein phosphatase 1 regulatory subunit 13B).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

6 figures from Thisse et al., 2001

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

cb375 (26 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With ppp1r13ba Human Ortholog

No data available

Associated With ppp1r13ba Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001452	SH3 domain
Domain	IPR048942	Apoptosis-stimulating of p53 protein 2-like, RA domain
Family	IPR047163	Apoptosis-stimulating of p53 protein 1/2
Homologous_superfamily	IPR029071	Ubiquitin-like domain superfamily
Homologous_superfamily	IPR036028	SH3-like domain superfamily
Homologous_superfamily	IPR036770	Ankyrin repeat-containing domain superfamily
Repeat	IPR002110	Ankyrin repeat

Domain Details Per Protein

Protein	Length	Ankyrin repeat	Ankyrin repeat-containing domain superfamily	Apoptosis-stimulating of p53 protein 1/2	Apoptosis-stimulating of p53 protein 2-like, RA domain	SH3 domain	SH3-like domain superfamily	Ubiquitin-like domain superfamily
UniProtKB:A0A8M3AR73 InterPro	1077
UniProtKB:A0A8M3AIS3 InterPro	1006
UniProtKB:A0A8M3AU31 InterPro	1082
UniProtKB:A0A8M3B283 InterPro	1001
UniProtKB:A0A8M3AJN6 InterPro	1117
UniProtKB:A0A8M3AJN8 InterPro	883
UniProtKB:F1RDT1 InterPro	1110

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	ppp1r13ba-201 (1) Ensembl	Ensembl	4,449 nt	Select Tool ZFIN BLAST
ncRNA	ppp1r13ba-002 (1) Ensembl	Ensembl	869 nt	Select Tool ZFIN BLAST
ncRNA	ppp1r13ba-003 (1) Ensembl	Ensembl	639 nt	Select Tool ZFIN BLAST
ncRNA	ppp1r13ba-004 (1) Ensembl	Ensembl	905 nt	Select Tool ZFIN BLAST
ncRNA	ppp1r13ba-005 (1) Ensembl	Ensembl	231 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations