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General Information
ZIRC
ZFIN ID: ZDB-GENE-030131-967
Gene Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Gene Symbol: smarce1
Sequence Ontology ID : SO:0000704

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Previous Names: baf57 (1), fb33d02, fb54d11, wu:fb33d02 (1), wu:fb54d11 (1)

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(Including Attributions)
Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have nuclear receptor binding activity. Involved in endocardium morphogenesis. Predicted to localize to the SWI/SNF complex. Human ortholog(s) of this gene implicated in familial  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:55303]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
DISEASE ASSOCIATED WITH smarce1 HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
Coffin-Siris syndrome 5 616938
{Meningioma, familial, susceptibility to} 607174
DISEASE ASSOCIATED WITH smarce1 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process endocardium morphogenesis (more)
Cellular Component nucleus (more)
Molecular Function DNA binding (more)
GO Terms (all 7)
TRANSCRIPTS
Type Name Length (bp) Analysis
mRNA smarce1-202 (1) 2072
GENE PRODUCT DESCRIPTION No description available
INTERACTIONS AND PATHWAYS
ANTIBODIESNo data available
PLASMIDSNo data available
CONSTRUCTS WITH SEQUENCES FROM smarce1 No data available
MARKER RELATIONSHIPS
smarce1Contained in: [BAC] DKEY-15H19 (1) (order this)
smarce1Encodes: [EST] fb33d02, fb54d11
[cDNA] MGC:55303 (1) (order this), MGC:77275 (1) (order this), MGC:191900 (1) (order this)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_201298 (1) 2062bp
Genomic GenBank:BX890590 (1) 141661bp
Select Tool
Polypeptide UniProtKB:Q803S1 (1) 420aa
Sequence Clusters UniGene:75920 (1)
Sequence Information (all 31)
ORTHOLOGY for smarce1 (Chr: 3)
CITATIONS (26)