ZFIN is now using GRCz12tu for Genomic Data
Gene

limch1b

ID
ZDB-GENE-030131-9210
Name
LIM and calponin homology domains 1b
Symbol
limch1b Nomenclature History
Previous Names
  • limch1
  • fc38d05
  • fk03g12
  • wu:fc38d05 (1)
  • wu:fk03g12 (1)
  • zgc:175186 (1)
Type
protein_coding_gene
Location
Chr: 14 Mapping Details/Browsers
Genome Assembly
GRCz12tu
Annotation Status
Current
Description
Predicted to enable myosin II head/neck binding activity. Predicted to be involved in positive regulation of stress fiber assembly and regulation of focal adhesion assembly. Predicted to be active in stress fiber. Orthologous to human LIMCH1 (LIM and calponin homology domains 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
No data available
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With limch1b Human Ortholog
No data available
Associated With limch1b Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001715 Calponin homology domain
Domain IPR001781 Zinc finger, LIM-type
Domain IPR031865 Domain of unknown function DUF4757
Homologous_superfamily IPR036872 CH domain superfamily
Domain Details Per Protein
Protein Additional Resources Length Calponin homology domain CH domain superfamily Domain of unknown function DUF4757 Zinc finger, LIM-type
UniProtKB:A0A8M9QBD4 InterPro 1185
UniProtKB:A0A8M9QKV9 InterPro 1147
UniProtKB:A0A8M9PZK0 InterPro 1036
UniProtKB:A0A8M3AHT4 InterPro 1083
UniProtKB:A0A8M9QGL6 InterPro 1182
UniProtKB:A0A8M3ARW6 InterPro 1071
UniProtKB:A0A0R4IJJ4 InterPro 1020
UniProtKB:A0A8M9PZJ6 InterPro 1210
UniProtKB:A0A8M9QPD2 InterPro 1172
UniProtKB:A0A8M3B082 InterPro 1198
UniProtKB:A0AB32T0P9 InterPro 1024
UniProtKB:A0AB32T7N0 InterPro 1173
UniProtKB:A0AB32T7N5 InterPro 1135
UniProtKB:A0AB32T7P5 InterPro 1160
UniProtKB:A0AB32T9C8 InterPro 1170
UniProtKB:A0AC58H764 InterPro 1159
UniProtKB:A0AC58H772 InterPro 1046
UniProtKB:A0AC58H773 InterPro 1121
UniProtKB:A0AC58H774 InterPro 1145
UniProtKB:A0AC58H775 InterPro 1107
UniProtKB:A0AC58H778 InterPro 1045
UniProtKB:A0AC58H780 InterPro 1096
UniProtKB:A0AC58H781 InterPro 1058
UniProtKB:A0AC58H782 InterPro 1055
UniProtKB:A0AC58H784 InterPro 1018
UniProtKB:A0AC58H785 InterPro 961
UniProtKB:A0AC58H786 InterPro 1033
UniProtKB:A0AC58H787 InterPro 1030
UniProtKB:A0AC58H788 InterPro 1043
UniProtKB:A0AC58H789 InterPro 1008
UniProtKB:A0AC58H790 InterPro 999
UniProtKB:A0AC58H791 InterPro 992
UniProtKB:A0AC58H792 InterPro 1132
UniProtKB:A0AC58H793 InterPro 1134
UniProtKB:A0AC58H794 InterPro 981
UniProtKB:A0AC58H795 InterPro 909
UniProtKB:A0AC58H796 InterPro 872
UniProtKB:A0AC58H797 InterPro 884
UniProtKB:A0AC58H798 InterPro 969
UniProtKB:A0AC58H799 InterPro 980
UniProtKB:A0AC58H7A0 InterPro 881
UniProtKB:A0AC58H7A2 InterPro 1017
UniProtKB:A0AC58H7A3 InterPro 897
UniProtKB:A0AC58H7A4 InterPro 1005
UniProtKB:A0AC58H7A5 InterPro 1007
UniProtKB:A0AC58H7A6 InterPro 859
UniProtKB:A0AC58H7A7 InterPro 844
UniProtKB:A0AC58H7A8 InterPro 834
UniProtKB:A0AC58H7A9 InterPro 806
UniProtKB:A0AC58H7B4 InterPro 818
UniProtKB:A0AC58H7B6 InterPro 871
UniProtKB:A0AC58H7B8 InterPro 856
UniProtKB:A0AC58H7C1 InterPro 846
UniProtKB:A0ACD6B7E9 InterPro 1020
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA limch1b-202 (1) Ensembl 5,500 nt
mRNA limch1b-203 (1) Ensembl 604 nt
mRNA limch1b-204 (1) Ensembl 806 nt
mRNA limch1b-205 (1) Ensembl 613 nt
ncRNA limch1b-004 (1) Ensembl 571 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Genome Browsers
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations