Gene

sdf2

ID

ZDB-GENE-030131-8823

Name

stromal cell-derived factor 2

Symbol

sdf2 Nomenclature History

Previous Names

fk23f01
wu:fk23f01
zgc:66291 (1)

Type

protein_coding_gene

Location

Chr: 21 Mapping Details/Browsers

Description

Predicted to have dolichyl-phosphate-mannose-protein mannosyltransferase activity. Predicted to be involved in ER-associated misfolded protein catabolic process and protein O-linked mannosylation. Predicted to localize to endoplasmic reticulum membrane. Orthologous to human SDF2 (stromal cell derived factor 2).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

MGC:66291 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With sdf2 Human Ortholog

No data available

Associated With sdf2 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR016093	MIR motif
Homologous_superfamily	IPR036300	Mir domain superfamily

Domain Details Per Protein

Protein	Length	Mir domain superfamily	MIR motif
UniProtKB:Q7SXI7 InterPro	222

Transcripts

Genome Browsers

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	sdf2-201 (1) Ensembl	Ensembl		2,200 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations