Gene

vmp1

ID

ZDB-GENE-030131-8733

Name

vacuole membrane protein 1

Symbol

vmp1 Nomenclature History

Previous Names

tmem49
wu:fb05d08
wu:fb92g08
zgc:77153

Type

protein_coding_gene

Location

Chr: 15 Mapping Details/Browsers

Description

Predicted to be involved in Golgi organization and autophagy. Predicted to localize to endoplasmic reticulum and membrane. Is expressed in several structures, including EVL; digestive system; intestinal bulb primordium; nervous system; and optic vesicle. Orthologous to human VMP1 (vacuole membrane protein 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

7 figures from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7143068 (1 image)
IMAGE:6905126 (12 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 7 figures from 2 publications
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With vmp1 Human Ortholog

No data available

Associated With vmp1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

No data available

Domain Details Per Protein

Protein	Length
UniProtKB:F1Q6C7 InterPro	406
UniProtKB:Q6NYY9 InterPro	406

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	vmp1-201 (1) Ensembl	Ensembl	2,135 nt	Select Tool ZFIN BLAST
mRNA	vmp1-202 (1) Ensembl	Ensembl	2,060 nt	Select Tool ZFIN BLAST
ncRNA	vmp1-002 (1) Ensembl	Ensembl	709 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations