ZFIN is now using GRCz12tu for Genomic Data
Gene
sdk2b
- ID
- ZDB-GENE-030131-8203
- Name
- sidekick cell adhesion molecule 2b
- Symbol
- sdk2b Nomenclature History
- Previous Names
-
- fj59h01
- si:ch211-160a3.1
- wu:fj59h01 (1)
- Type
- protein_coding_gene
- Location
- Chr: 12 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to be involved in homophilic cell-cell adhesion and synapse assembly. Predicted to be located in plasma membrane. Predicted to be active in synapse. Is expressed in ciliary marginal zone; retinal ganglion cell layer; retinal inner nuclear layer; and retinal outer nuclear layer. Orthologous to human SDK2 (sidekick cell adhesion molecule 2).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 4 figures from Galicia et al., 2018
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR003598 | Immunoglobulin subtype 2 |
| Domain | IPR003599 | Immunoglobulin domain subtype |
| Domain | IPR003961 | Fibronectin type III |
| Domain | IPR007110 | Immunoglobulin-like domain |
| Domain | IPR013098 | Immunoglobulin I-set |
| Homologous_superfamily | IPR013783 | Immunoglobulin-like fold |
| Homologous_superfamily | IPR036116 | Fibronectin type III superfamily |
| Homologous_superfamily | IPR036179 | Immunoglobulin-like domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | Fibronectin type III | Fibronectin type III superfamily | Immunoglobulin domain subtype | Immunoglobulin I-set | Immunoglobulin-like domain | Immunoglobulin-like domain superfamily | Immunoglobulin-like fold | Immunoglobulin subtype 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M3BEB8 | InterPro | 2256 | ||||||||
| UniProtKB:A0A8M3AYL4 | InterPro | 2240 | ||||||||
| UniProtKB:A0A8M3B4U7 | InterPro | 2221 | ||||||||
| UniProtKB:A0A8M3B7N2 | InterPro | 2237 | ||||||||
| UniProtKB:A0A8M3AYN6 | InterPro | 1254 | ||||||||
| UniProtKB:A0A8M9QJA7 | InterPro | 2254 |
- Genome Browsers
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers