ZFIN is now using GRCz12tu for Genomic Data
Gene
slc6a17
- ID
- ZDB-GENE-030131-8187
- Name
- solute carrier family 6 member 17
- Symbol
- slc6a17 Nomenclature History
- Previous Names
-
- fj59a05
- si:dkey-71l10.2
- wu:fj59a05
- Type
- protein_coding_gene
- Location
- Chr: 8 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable metal ion binding activity and symporter activity. Predicted to be involved in neutral amino acid transport and sodium ion transmembrane transport. Predicted to be located in plasma membrane. Predicted to be active in membrane and synaptic vesicle. Human ortholog(s) of this gene implicated in autosomal recessive intellectual developmental disorder 48. Orthologous to human SLC6A17 (solute carrier family 6 member 17).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Shankar et al., 2022
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| autosomal recessive intellectual developmental disorder 48 | Alliance | Intellectual developmental disorder, autosomal recessive 48 | 616269 |
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Neutral amino acid SLC6 transporter | Sodium:neurotransmitter symporter | Sodium:neurotransmitter symporter superfamily |
|---|---|---|---|---|---|
| UniProtKB:X1WEE1 | InterPro | 730 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
slc6a17-201
(1)
|
Ensembl | 3,847 nt | ||
| mRNA |
slc6a17-202
(1)
|
Ensembl | 2,561 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers