ZFIN is now using GRCz12tu for Genomic Data
Gene
arhgap42a
- ID
- ZDB-GENE-030131-8077
- Name
- Rho GTPase activating protein 42a
- Symbol
- arhgap42a Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 21 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoplasm. Orthologous to human ARHGAP42 (Rho GTPase activating protein 42).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Thisse et al., 2005
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- eu1120 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000198 | Rho GTPase-activating protein domain |
| Domain | IPR001452 | SH3 domain |
| Domain | IPR001849 | Pleckstrin homology domain |
| Domain | IPR004148 | BAR domain |
| Domain | IPR047225 | GRAF, PH domain |
| Family | IPR047234 | GRAF family |
| Homologous_superfamily | IPR008936 | Rho GTPase activation protein |
| Homologous_superfamily | IPR011993 | PH-like domain superfamily |
| Homologous_superfamily | IPR027267 | AH/BAR domain superfamily |
| Homologous_superfamily | IPR036028 | SH3-like domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | AH/BAR domain superfamily | BAR domain | GRAF family | GRAF, PH domain | PH-like domain superfamily | Pleckstrin homology domain | Rho GTPase-activating protein domain | Rho GTPase activation protein | SH3 domain | SH3-like domain superfamily |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:I3ITG1 | InterPro | 880 | ||||||||||
| UniProtKB:Q6ZM89 | InterPro | 805 | ||||||||||
| UniProtKB:A0A8M9PU04 | InterPro | 900 | ||||||||||
| UniProtKB:A0AB32T9Q6 | InterPro | 858 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
arhgap42a-201
(1)
|
Ensembl | 3,880 nt | ||
| mRNA |
arhgap42a-203
(1)
|
Ensembl | 3,948 nt | ||
| ncRNA |
arhgap42a-002
(1)
|
Ensembl | 676 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers