Gene
si:dkey-35i13.1
- ID
- ZDB-GENE-030131-8008
- Name
- si:dkey-35i13.1
- Symbol
- si:dkey-35i13.1 Nomenclature History
- Previous Names
-
- fj46d11
- wu:fj46d11 (1)
- Type
- protein_coding_gene
- Location
- Chr: 15 Mapping Details/Browsers
- Description
- Is expressed in Purkinje cell; cerebellum; granule cell; hindbrain; and optic tectum. Orthologous to human C11orf87 (chromosome 11 open reading frame 87).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 2 figures from Takeuchi et al., 2017
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Allele | Type | Localization | Consequence | Mutagen | Supplier |
|---|---|---|---|---|---|
| a241 | Allele with multiple variants | Unknown | Unknown | CRISPR |
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| Targeting Reagent | Created Alleles | Citations |
|---|---|---|
| CRISPR1-si:dkey-35i13.1 | Thyme et al., 2019 | |
| CRISPR2-si:dkey-35i13.1 | Thyme et al., 2019 | |
| CRISPR3-si:dkey-35i13.1 | Thyme et al., 2019 | |
| CRISPR4-si:dkey-35i13.1 | Thyme et al., 2019 |
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Human Disease
Domain, Family, and Site Summary
No data available
Domain Details Per Protein
No data available
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
si:dkey-35i13.1-201
(1)
|
Ensembl | 2,587 nt |
Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | DKEY-35I13 | ZFIN Curated Data | |
| Encodes | EST | fj46d11 |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:XR_011006396 (1) | 1956 nt | ||
| Genomic | GenBank:BX004968 (2) | 208706 nt |
- Thyme, S.B., Pieper, L.M., Li, E.H., Pandey, S., Wang, Y., Morris, N.S., Sha, C., Choi, J.W., Herrera, K.J., Soucy, E.R., Zimmerman, S., Randlett, O., Greenwood, J., McCarroll, S.A., Schier, A.F. (2019) Phenotypic Landscape of Schizophrenia-Associated Genes Defines Candidates and Their Shared Functions. Cell. 177(2):478-491.e20
- Takeuchi, M., Yamaguchi, S., Sakakibara, M., Hayashi, T., Matsuda, K., Hara, Y., Tanegashima, C., Shimizu, T., Kuraku, S., Hibi, M. (2017) Gene expression profiling of granule cells and Purkinje cells in the zebrafish cerebellum. The Journal of comparative neurology. 525(7):1558-1585
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