ZFIN is now using GRCz12tu for Genomic Data
Gene
lrp1aa
- ID
- ZDB-GENE-030131-7889
- Name
- low density lipoprotein receptor-related protein 1Aa
- Symbol
- lrp1aa Nomenclature History
- Previous Names
-
- lrp1a
- si:dkey-40c23.4
- wu:fj39b01
- Type
- protein_coding_gene
- Location
- Chr: 11 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable apolipoprotein binding activity and cargo receptor activity. Acts upstream of or within regulation of vasculature development. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in blood vessel and caudal vein plexus. Human ortholog(s) of this gene implicated in Alzheimer's disease; keratosis pilaris atrophicans; myocardial infarction; and sciatic neuropathy. Orthologous to human LRP1 (LDL receptor related protein 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 3 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:7142928 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- 3 figures from Pi et al., 2012
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| keratosis pilaris atrophicans | Alliance | ?Keratosis pilaris atrophicans | 604093 |
| Developmental dysplasia of the hip 3 | 620690 |
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR018097 | EGF-like calcium-binding, conserved site |
| Conserved_site | IPR023415 | Low-density lipoprotein (LDL) receptor class A, conserved site |
| Domain | IPR000742 | EGF-like domain |
| Domain | IPR001881 | EGF-like calcium-binding domain |
| Domain | IPR026823 | Complement Clr-like EGF domain |
| Domain | IPR032485 | Prolow-density lipoprotein receptor-related protein 1-like, beta-propeller domain |
| Domain | IPR049883 | NOTCH1 EGF-like calcium-binding domain |
| Family | IPR051221 | Low-density lipoprotein receptor-related |
| Homologous_superfamily | IPR009030 | Growth factor receptor cysteine-rich domain superfamily |
| Homologous_superfamily | IPR011042 | Six-bladed beta-propeller, TolB-like |
| Homologous_superfamily | IPR036055 | LDL receptor-like superfamily |
| PTM | IPR000152 | EGF-type aspartate/asparagine hydroxylation site |
| Repeat | IPR000033 | LDLR class B repeat |
| Repeat | IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat |
Domain Details Per Protein
| Protein | Additional Resources | Length | Complement Clr-like EGF domain | EGF-like calcium-binding, conserved site | EGF-like calcium-binding domain | EGF-like domain | EGF-type aspartate/asparagine hydroxylation site | Growth factor receptor cysteine-rich domain superfamily | LDLR class B repeat | LDL receptor-like superfamily | Low-density lipoprotein (LDL) receptor class A, conserved site | Low-density lipoprotein (LDL) receptor class A repeat | Low-density lipoprotein receptor-related | NOTCH1 EGF-like calcium-binding domain | Prolow-density lipoprotein receptor-related protein 1-like, beta-propeller domain | Six-bladed beta-propeller, TolB-like |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M9QD95 | InterPro | 4560 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
lrp1aa-201
(1)
|
Ensembl | 4,949 nt | ||
| mRNA |
lrp1aa-202
(1)
|
Ensembl | 13,518 nt | ||
| mRNA |
lrp1aa-203
(1)
|
Ensembl | 3,571 nt | ||
| mRNA |
lrp1aa-204
(1)
|
Ensembl | 3,053 nt | ||
| mRNA |
lrp1aa-205
(1)
|
Ensembl | 1,685 nt | ||
| mRNA |
lrp1aa-206
(1)
|
Ensembl | 309 nt | ||
| mRNA |
lrp1aa-207
(1)
|
Ensembl | 582 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers