Gene
tnrc6c1
- ID
- ZDB-GENE-030131-7440
- Name
- trinucleotide repeat containing adaptor 6C1
- Symbol
- tnrc6c1 Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 3 Mapping Details/Browsers
- Description
- Predicted to have RNA binding activity. Predicted to be involved in gene silencing by miRNA and positive regulation of nuclear-transcribed mRNA poly(A) tail shortening. Predicted to localize to P-body and nucleoplasm. Orthologous to human TNRC6C (trinucleotide repeat containing adaptor 6C).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000504 | RNA recognition motif domain |
| Domain | IPR015940 | Ubiquitin-associated domain |
| Domain | IPR019486 | Argonaute hook domain |
| Domain | IPR026805 | GW182, middle domain |
| Domain | IPR032226 | TNRC6, PABC binding domain |
| Domain | IPR041917 | Trinucleotide repeat-containing gene 6C protein, UBA domain |
| Homologous_superfamily | IPR009060 | UBA-like superfamily |
| Homologous_superfamily | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| Homologous_superfamily | IPR035979 | RNA-binding domain superfamily |
Domain Details Per Protein
| Protein | Length | Argonaute hook domain | GW182, middle domain | Nucleotide-binding alpha-beta plait domain superfamily | RNA-binding domain superfamily | RNA recognition motif domain | TNRC6, PABC binding domain | Trinucleotide repeat-containing gene 6C protein, UBA domain | UBA-like superfamily | Ubiquitin-associated domain |
|---|---|---|---|---|---|---|---|---|---|---|
|
UniProtKB:A0A8M3AR11
|
1746 | |||||||||
|
UniProtKB:A0A8M3B8E0
|
1818 | |||||||||
|
UniProtKB:A0A8M3AQR0
|
1852 | |||||||||
|
UniProtKB:A0A8M3B136
|
1726 | |||||||||
|
UniProtKB:I3IRW6
|
1817 | |||||||||
|
UniProtKB:A0A8M2BBJ0
|
1851 |
| Type | Name | Annotation Method | Length (nt) | Analysis |
|---|---|---|---|---|
| mRNA |
tnrc6c1-202
(1)
|
Havana | 12420 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Comparative Orthology
- Alliance