Gene

tnrc6c1

ID

ZDB-GENE-030131-7440

Name

trinucleotide repeat containing adaptor 6C1

Symbol

tnrc6c1 Nomenclature History

Previous Names

fj17e06
si:dkey-54k13.1 (1)
unm_sa1472
wu:fj17e06 (1)

Type

protein_coding_gene

Location

Chr: 3 Mapping Details/Browsers

Description

Predicted to have RNA binding activity. Predicted to be involved in gene silencing by miRNA and positive regulation of nuclear-transcribed mRNA poly(A) tail shortening. Predicted to localize to P-body and nucleoplasm. Orthologous to human TNRC6C (trinucleotide repeat containing adaptor 6C).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With tnrc6c1 Human Ortholog

No data available

Associated With tnrc6c1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR015940	Ubiquitin-associated domain
Domain	IPR019486	Argonaute hook domain
Domain	IPR026805	GW182, middle domain
Domain	IPR032226	TNRC6, PABC binding domain
Domain	IPR041917	Trinucleotide repeat-containing gene 6C protein, UBA domain
Family	IPR052068	GW182 domain-containing protein
Homologous_superfamily	IPR009060	UBA-like superfamily
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	Argonaute hook domain	GW182 domain-containing protein	GW182, middle domain	Nucleotide-binding alpha-beta plait domain superfamily	RNA-binding domain superfamily	RNA recognition motif domain	TNRC6, PABC binding domain	Trinucleotide repeat-containing gene 6C protein, UBA domain	UBA-like superfamily	Ubiquitin-associated domain
UniProtKB:A0A8M3AR11 InterPro	1746
UniProtKB:A0A8M3B8E0 InterPro	1818
UniProtKB:A0A8M3AQR0 InterPro	1852
UniProtKB:A0A8M3B136 InterPro	1726
UniProtKB:I3IRW6 InterPro	1817
UniProtKB:A0A8M2BBJ0 InterPro	1851

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	tnrc6c1-201 (1) Ensembl	Ensembl	5,028 nt	Select Tool ZFIN BLAST
mRNA	tnrc6c1-202 (1) Ensembl	Ensembl	12,420 nt	Select Tool ZFIN BLAST
mRNA	tnrc6c1-203 (1) Ensembl	Ensembl	5,034 nt	Select Tool ZFIN BLAST
mRNA	tnrc6c1-204 (1) Ensembl	Ensembl	4,620 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance

Citations