Gene
col17a1b
- ID
- ZDB-GENE-030131-7145
- Name
- collagen, type XVII, alpha 1b
- Symbol
- col17a1b Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 13 Mapping Details/Browsers
- Description
- Predicted to have extracellular matrix structural constituent. Involved in lateral line system development. Predicted to localize to extracellular matrix and extracellular space. Human ortholog(s) of this gene implicated in epithelial recurrent erosion dystrophy; junctional epidermolysis bullosa; and junctional epidermolysis bullosa non-Herlitz type. Is expressed in hypodermis; lateral line; and neuromast. Orthologous to human COL17A1 (collagen type XVII alpha 1 chain).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 4 figures from 4 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- 2 figures from Kim et al., 2010
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| epithelial recurrent erosion dystrophy | Alliance | Epithelial recurrent erosion dystrophy | 122400 |
| Epidermolysis bullosa, junctional 4, intermediate | 619787 |
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Length | Collagen superfamily | Collagen triple helix repeat |
|---|---|---|---|
|
UniProtKB:A0A8M2B345
|
1517 | ||
|
UniProtKB:A0A8N7UTE7
|
1542 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
col17a1b-201
(1)
|
Ensembl | 2,349 nt | ||
| mRNA |
col17a1b-202
(1)
|
Ensembl | 4,533 nt | ||
| mRNA |
col17a1b-203
(1)
|
Ensembl | 510 nt |
Interactions and Pathways
No data available
Plasmids
No data available