Gene

r3hdm1

ID

ZDB-GENE-030131-7119

Name

R3H domain containing 1

Symbol

r3hdm1 Nomenclature History

Previous Names

fj35h04
fk85b04
id:ibd5043
sb:eu460
si:ch73-60i13.2
WITHDRAWN: wu:fj35h04
wu:fj35h04
wu:fk85b04 (1)

Type

protein_coding_gene

Location

Chr: 22 Mapping Details/Browsers

Description

Is expressed in forebrain; hindbrain; olfactory placode; and peripheral olfactory organ. Orthologous to human R3HDM1 (R3H domain containing 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

7 figures from 2 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

eu460 (8 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Allele	Type	Localization	Consequence	Mutagen	Supplier
sa24103	Allele with one point mutation	Unknown	Splice Site	ENU	Zebrafish International Resource Center (ZIRC) (order this) European Zebrafish Resource Center (EZRC) (order this)
sa37455	Allele with one point mutation	Unknown	Premature Stop	ENU	Zebrafish International Resource Center (ZIRC) (order this) European Zebrafish Resource Center (EZRC) (order this)

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Sequence Targeting Reagents

No data available

Human Disease

Associated With r3hdm1 Human Ortholog

No data available

Associated With r3hdm1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR051937	R3H domain-containing

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Domain Details Per Protein

Protein	Additional Resources	Length
UniProtKB:A0A8M3AMX8	InterPro	77
UniProtKB:A0A8M3B5F8	InterPro	118
UniProtKB:A0A0R4IRP9	InterPro	815
UniProtKB:A0A2R8PZR3	InterPro	735
UniProtKB:A0A8M9P4Q0	InterPro	662

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Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Genome Build: GRCz11Chromosome: 22

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	r3hdm1-201 (1) Ensembl	Ensembl	3,126 nt	Select Tool ZFIN BLAST
mRNA	r3hdm1-202 (1) Ensembl	Ensembl	6,051 nt	Select Tool ZFIN BLAST
mRNA	r3hdm1-203 (1) Ensembl	Ensembl	771 nt	Select Tool ZFIN BLAST
mRNA	r3hdm1-204 (1) Ensembl	Ensembl	6,023 nt	Select Tool ZFIN BLAST
mRNA	r3hdm1-205 (1) Ensembl	Ensembl	5,811 nt	Select Tool ZFIN BLAST

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Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

No data available

Marker Relationships

Relationship	Marker Type	Marker	Accession Numbers	Citations
Contained in	BAC	CH73-60I13	CU459063	ZFIN Curated Data
Encodes	EST	eu460	DU730988	Thisse et al., 2005
Encodes	EST	fj35h04	AW077332 AW077570
Encodes	EST	fk85b04	BE017829 BE201036
Encodes	EST	ibd5043	BG985593
Has Artifact	EST	fj35h04	AW077332 AW077570

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Sequences

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:XM_021469571 (1)	3440 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:CU459063 (1)	99809 nt	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:A0A8M9PSE0 (1)	820 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Species	Symbol	Chromosome	Accession #	Evidence
Human	R3HDM1	2	Ensembl:ENSG00000048991 Gene:23518 HGNC:9757 OMIM:619474	Amino acid sequence comparison (1) Conserved genome location (synteny) (1)
Mouse	R3hdm1	1	Ensembl:ENSMUSG00000056211 Gene:226412 MGI:2448514	Amino acid sequence comparison (1) Conserved genome location (synteny) (1)

Citations

Include unpublished citations

Takeuchi, M., Yamaguchi, S., Sakakibara, M., Hayashi, T., Matsuda, K., Hara, Y., Tanegashima, C., Shimizu, T., Kuraku, S., Hibi, M. (2017) Gene expression profiling of granule cells and Purkinje cells in the zebrafish cerebellum. The Journal of comparative neurology. 525(7):1558-1585

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