ZFIN is now using GRCz12tu for Genomic Data
Gene
col10a1b
- ID
- ZDB-GENE-030131-7079
- Name
- collagen, type X, alpha 1b
- Symbol
- col10a1b Nomenclature History
- Previous Names
-
- wu:fk76c08 (1)
- Type
- protein_coding_gene
- Location
- Chr: 20 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Is expressed in ceratobranchial 5 tooth; dental papilla; and regenerating fin. Human ortholog(s) of this gene implicated in Schmid metaphyseal chondrodysplasia; lung cancer; and osteochondrodysplasia. Orthologous to human COL10A1 (collagen type X alpha 1 chain).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 3 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| Schmid metaphyseal chondrodysplasia | Alliance | Metaphyseal chondrodysplasia, Schmid type | 156500 |
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | C1q domain | Collagen/C1q domain-containing | Collagen triple helix repeat | Tumour necrosis factor-like domain superfamily |
|---|---|---|---|---|---|---|
| UniProtKB:A0A0R4IAT5 | InterPro | 659 | ||||
| UniProtKB:A0ACD6B7A9 | InterPro | 659 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
col10a1b-201
(1)
|
Ensembl | 2,356 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers