Gene

hnrnpm

ID

ZDB-GENE-030131-6898

Name

heterogeneous nuclear ribonucleoprotein M

Symbol

hnrnpm Nomenclature History

Previous Names

si:ch211-197g15.1
wu:fa10g07 (1)
wu:fa98b02

Type

protein_coding_gene

Location

Chr: 22 Mapping Details/Browsers

Description

Predicted to have mRNA binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome and regulation of mRNA stability involved in response to oxidative stress. Predicted to localize to cytoplasm and post-mRNA release spliceosomal complex. Orthologous to human HNRNPM (heterogeneous nuclear ribonucleoprotein M).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2005

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

eu1037 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With hnrnpm Human Ortholog

No data available

Associated With hnrnpm Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR034990	hnRNPM, RNA recognition motif 3
Family	IPR050374	RRT5/SRSF/Splicing Factor SR
Family	IPR050502	Eukaryotic RNA-binding
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	Eukaryotic RNA-binding	hnRNPM, RNA recognition motif 3	Nucleotide-binding alpha-beta plait domain superfamily	RNA-binding domain superfamily	RNA recognition motif domain	RRT5/SRSF/Splicing Factor SR
UniProtKB:A0A8M2BHT4 InterPro	614
UniProtKB:A0A8M1NZJ3 InterPro	686
UniProtKB:F1R2E0 InterPro	715
UniProtKB:E9QEE4 InterPro	701

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	hnrnpm-201 (1) Ensembl	Ensembl	5,187 nt	Select Tool ZFIN BLAST
mRNA	hnrnpm-202 (1) Ensembl	Ensembl	2,559 nt	Select Tool
mRNA	hnrnpm-204 (1) Ensembl	Ensembl	703 nt	Select Tool
mRNA	hnrnpm-206 (1) Ensembl	Ensembl	2,274 nt	Select Tool ZFIN BLAST
ncRNA	hnrnpm-003 (1) Ensembl	Ensembl	947 nt	Select Tool
ncRNA	hnrnpm-004 (1) Ensembl	Ensembl	796 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations