Gene
hnrnpm
- ID
- ZDB-GENE-030131-6898
- Name
- heterogeneous nuclear ribonucleoprotein M
- Symbol
- hnrnpm Nomenclature History
- Previous Names
-
- si:ch211-197g15.1
- wu:fa10g07 (1)
- wu:fa98b02
- Type
- protein_coding_gene
- Location
- Chr: 22 Mapping Details/Browsers
- Description
- Predicted to enable mRNA binding activity. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human HNRNPM (heterogeneous nuclear ribonucleoprotein M).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Thisse et al., 2005
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- eu1037 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
No data available
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000504 | RNA recognition motif domain |
| Domain | IPR034990 | hnRNPM, RNA recognition motif 3 |
| Family | IPR050374 | RRT5/SRSF/Splicing Factor SR |
| Homologous_superfamily | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| Homologous_superfamily | IPR035979 | RNA-binding domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | hnRNPM, RNA recognition motif 3 | Nucleotide-binding alpha-beta plait domain superfamily | RNA-binding domain superfamily | RNA recognition motif domain | RRT5/SRSF/Splicing Factor SR |
|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M2BHT4 | InterPro | 614 | |||||
| UniProtKB:A0A8M1NZJ3 | InterPro | 686 | |||||
| UniProtKB:F1R2E0 | InterPro | 715 | |||||
| UniProtKB:E9QEE4 | InterPro | 701 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
hnrnpm-201
(1)
|
Ensembl | 5,187 nt | ||
| mRNA |
hnrnpm-202
(1)
|
Ensembl | 2,559 nt | ||
| mRNA |
hnrnpm-204
(1)
|
Ensembl | 703 nt | ||
| mRNA |
hnrnpm-206
(1)
|
Ensembl | 2,274 nt | ||
| ncRNA |
hnrnpm-003
(1)
|
Ensembl | 947 nt | ||
| ncRNA |
hnrnpm-004
(1)
|
Ensembl | 796 nt |
Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-197G15 | ZFIN Curated Data | |
| Encodes | EST | eu1037 | Thisse et al., 2005 | |
| Encodes | EST | fa10g07 | ||
| Encodes | EST | fa98b02 | ||
| Encodes | EST | IMAGE:7143388 | Thisse et al., 2004 |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_001256631 (1) | 2491 nt | ||
| Genomic | GenBank:BX649327 (1) | 206348 nt | ||
| Polypeptide | UniProtKB:F1R2E0 (1) | 715 aa |
- Kansler, E.R., Verma, A., Langdon, E.M., Simon-Vermot, T., Yin, A., Lee, W., Attiyeh, M., Elemento, O., White, R.M. (2017) Melanoma genome evolution across species. BMC Genomics. 18:136
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
- Tiefenbach, J., Moll, P.R., Nelson, M.R., Hu, C., Baev, L., Kislinger, T., and Krause, H.M. (2010) A live zebrafish-based screening system for human nuclear receptor ligand and cofactor discovery. PLoS One. 5(3):e9797
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