Gene
tdrd6b
- ID
- ZDB-GENE-030131-6454
- Name
- tudor domain containing 6b
- Symbol
- tdrd6b Nomenclature History
- Previous Names
-
- fj98d01
- si:ch211-189e2.3
- wu:fj98d01 (1)
- Type
- protein_coding_gene
- Location
- Chr: 17 Mapping Details/Browsers
- Description
- Predicted to be involved in P granule organization; piRNA processing; and spermatogenesis. Predicted to be active in P granule. Orthologous to human TDRD6 (tudor domain containing 6).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Allele | Type | Localization | Consequence | Mutagen | Supplier |
|---|---|---|---|---|---|
| mz69 | unknown | Unknown | Unknown | not specified | |
| sa13845 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa22990 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa36303 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa39141 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa42863 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa42864 | Allele with one point mutation | Unknown | Premature Stop | ENU |
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No data available
Human Disease
Domain, Family, and Site Summary
No data available
Domain Details Per Protein
| Protein | Additional Resources | Length |
|---|---|---|
| UniProtKB:A0A8M9P0B8 | InterPro | 118 |
| UniProtKB:A0A8M9P970 | InterPro | 117 |
| UniProtKB:A0A8M9PCG6 | InterPro | 1813 |
| UniProtKB:A0AB32TGE0 | InterPro | 1814 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
si:ch211-189e2.3-201
(1)
|
Ensembl | 5,764 nt | ||
| mRNA |
si:ch211-189e2.3-202
(1)
|
Ensembl | 6,007 nt | ||
| mRNA |
si:ch211-189e2.3-203
(1)
|
Ensembl | 6,294 nt | ||
| mRNA |
si:ch211-189e2.3-204
(1)
|
Ensembl | 6,281 nt |
Interactions and Pathways
No data available
Plasmids
No data available
| Construct | Regulatory Region | Coding Sequence | Species | Tg Lines | Citations |
|---|---|---|---|---|---|
| Tg(piwil1:tdrd6b-mKate-tdrd6b-3'UTR) |
| 1 | Zebrafish Nomenclature Committee |
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| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-189E2 | ZFIN Curated Data | |
| Encodes | EST | fj98d01 |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:XM_068218838 (1) | 6071 nt | ||
| Genomic | GenBank:AL929338 (1) | 179399 nt | ||
| Polypeptide | UniProtKB:A0AB32TGE0 (1) | 1814 aa |
- Comparative Orthology
- Alliance
- Zebrafish Nomenclature Committee (2024) Nomenclature Data Curation (2024). Nomenclature Committee Submission.
- Fouchécourt, S., Picolo, F., Elis, S., Lécureuil, C., Thélie, A., Govoroun, M., Brégeon, M., Papillier, P., Lareyre, J.J., Monget, P. (2019) An evolutionary approach to recover genes predominantly expressed in the testes of the zebrafish, chicken and mouse. BMC Evolutionary Biology. 19:137
- Braasch, I., Gehrke, A.R., Smith, J.J., Kawasaki, K., Manousaki, T., Pasquier, J., Amores, A., Desvignes, T., Batzel, P., Catchen, J., Berlin, A.M., Campbell, M.S., Barrell, D., Martin, K.J., Mulley, J.F., Ravi, V., Lee, A.P., Nakamura, T., Chalopin, D., Fan, S., Wcisel, D., Cañestro, C., Sydes, J., Beaudry, F.E., Sun, Y., Hertel, J., Beam, M.J., Fasold, M., Ishiyama, M., Johnson, J., Kehr, S., Lara, M., Letaw, J.H., Litman, G.W., Litman, R.T., Mikami, M., Ota, T., Saha, N.R., Williams, L., Stadler, P.F., Wang, H., Taylor, J.S., Fontenot, Q., Ferrara, A., Searle, S.M., Aken, B., Yandell, M., Schneider, I., Yoder, J.A., Volff, J.N., Meyer, A., Amemiya, C.T., Venkatesh, B., Holland, P.W., Guiguen, Y., Bobe, J., Shubin, N.H., Di Palma, F., Alföldi, J., Lindblad-Toh, K., Postlethwait, J.H. (2016) The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nature Genetics. 48(4):427-37
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