Gene

ptcd1

ID

ZDB-GENE-030131-6146

Name

pentatricopeptide repeat domain 1

Symbol

ptcd1 Nomenclature History

Previous Names

wu:fi36d06

Type

protein_coding_gene

Location

Chr: 1 Mapping Details/Browsers

Description

Predicted to have tRNA binding activity. Predicted to be involved in tRNA 3'-end processing. Predicted to localize to mitochondrial matrix. Orthologous to several human genes including PTCD1 (pentatricopeptide repeat domain 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With ptcd1 Human Ortholog

No data available

Associated With ptcd1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Homologous_superfamily	IPR011990	Tetratricopeptide-like helical domain superfamily
Repeat	IPR002885	Pentatricopeptide repeat

Domain Details Per Protein

Protein	Length	Pentatricopeptide repeat	Tetratricopeptide-like helical domain superfamily
UniProtKB:A0A8M9PJI3 InterPro	663
UniProtKB:E7F3M0 InterPro	697
UniProtKB:A0A2R8RTA8 InterPro	697

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	ptcd1-201 (1) Ensembl	Ensembl		2,344 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations