Gene

lrrc40

ID

ZDB-GENE-030131-6062

Name

leucine rich repeat containing 40

Symbol

lrrc40 Nomenclature History

Previous Names

fi33a12
wu:fi33a12
zgc:63729 (1)

Type

protein_coding_gene

Location

Chr: 6 Mapping Details/Browsers

Description

Orthologous to human LRRC40 (leucine rich repeat containing 40).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

MGC:63729 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With lrrc40 Human Ortholog

No data available

Associated With lrrc40 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR050216	Leucine-rich repeat domain-containing protein
Homologous_superfamily	IPR032675	Leucine-rich repeat domain superfamily
Repeat	IPR001611	Leucine-rich repeat
Repeat	IPR003591	Leucine-rich repeat, typical subtype

Domain Details Per Protein

Protein	Length	Leucine-rich repeat	Leucine-rich repeat domain-containing protein	Leucine-rich repeat domain superfamily	Leucine-rich repeat, typical subtype
UniProtKB:Q7SXW3 InterPro	601

Transcripts

Genome Browsers

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	lrrc40-201 (1) Ensembl	Ensembl		2,217 nt	Select Tool ZFIN BLAST
ncRNA	lrrc40-002 (1) Ensembl	Ensembl		850 nt	Select Tool ZFIN BLAST
ncRNA	lrrc40-003 (1) Ensembl	Ensembl		916 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations