ZFIN is now using GRCz12tu for Genomic Data
Gene
cirbpb
- ID
- ZDB-GENE-030131-5841
- Name
- cold inducible RNA binding protein b
- Symbol
- cirbpb Nomenclature History
- Previous Names
-
- cirbp
- wu:fb12c11
- wu:fi20g12
- zgc:136559
- Type
- protein_coding_gene
- Location
- Chr: 22 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable RNA binding activity. Acts upstream of or within response to cold. Predicted to be located in cytoplasm and nucleoplasm. Predicted to be part of spliceosomal complex. Is expressed in several structures, including gill; heart; liver; muscle; and pleuroperitoneal region. Orthologous to several human genes including CIRBP (cold inducible RNA binding protein).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 3 figures from 3 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:55300 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000504 | RNA recognition motif domain |
| Domain | IPR003954 | RNA recognition motif domain, eukaryotes |
| Domain | IPR034278 | RBM3/CIRBP, RNA recognition motif |
| Family | IPR050441 | RNA-binding motif |
| Homologous_superfamily | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| Homologous_superfamily | IPR035979 | RNA-binding domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | Nucleotide-binding alpha-beta plait domain superfamily | RBM3/CIRBP, RNA recognition motif | RNA-binding domain superfamily | RNA-binding motif | RNA recognition motif domain | RNA recognition motif domain, eukaryotes |
|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M9P4C4 | InterPro | 203 | ||||||
| UniProtKB:A0A8M1P6M4 | InterPro | 203 | ||||||
| UniProtKB:A0A8M1N8U3 | InterPro | 206 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
cirbpb-201
(1)
|
Ensembl | 1,831 nt | ||
| mRNA |
cirbpb-202
(1)
|
Ensembl | 1,574 nt | ||
| mRNA |
cirbpb-203
(1)
|
Ensembl | 643 nt | ||
| mRNA |
cirbpb-205
(1)
|
Ensembl | 1,012 nt | ||
| ncRNA |
cirbpb-006
(1)
|
Ensembl | 2,794 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers