Gene
si:ch73-15b2.5
- ID
- ZDB-GENE-030131-5406
- Name
- si:ch73-15b2.5
- Symbol
- si:ch73-15b2.5 Nomenclature History
- Previous Names
-
- fd16d01
- wu:fd16d01 (1)
- wu:fi75h08
- Type
- protein_coding_gene
- Location
- Chr: 6 Mapping Details/Browsers
- Description
- Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of actin cytoskeleton organization. Predicted to be active in cytoplasm and nucleus.
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
No data available
No data available
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Dbl homology (DH) domain superfamily | Dbl homology domain | Ephexin-like | PH-like domain superfamily | Pleckstrin homology domain |
|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M9Q0U2 | InterPro | 420 | |||||
| UniProtKB:X1WCT2 | InterPro | 532 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
si:ch73-15b2.5-202
(1)
|
Ensembl | 1,931 nt | ||
| mRNA |
si:ch73-15b2.5-204
(1)
|
Ensembl | 1,329 nt | ||
| ncRNA |
si:ch73-15b2.5-002
(1)
|
Ensembl | 866 nt | ||
| ncRNA |
si:ch73-15b2.5-003
(1)
|
Ensembl | 394 nt |
Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH73-15B2 | ZFIN Curated Data | |
| Contains | SNP | rs3727994 | ZFIN Curated Data | |
| Contains | SNP | rs3727995 | ZFIN Curated Data | |
| Encodes | EST | fd16d01 | ||
| Encodes | EST | fi75h08 |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:XM_681781 (1) | 1900 nt | ||
| Genomic | GenBank:CU463231 (1) | 104010 nt | ||
| Polypeptide | UniProtKB:X1WCT2 (1) | 532 aa |
No data available
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
- Li, Y., Chia, J.M., Bartfai, R., Christoffels, A., Ding, K., Yue, G.H., Ho,M.Y., Hill, J.A., Stupka, E. and Orban, L (2004) Comparative analysis of the testis and ovary transcriptomes in zebrafish by combining experimental and computational tools. Comparative and functional genomics. 5(5):403-418
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