ZFIN is now using GRCz12tu for Genomic Data
Gene
pdlim1
- ID
- ZDB-GENE-030131-5227
- Name
- PDZ and LIM domain 1 (elfin)
- Symbol
- pdlim1 Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 13 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable actin binding activity and muscle alpha-actinin binding activity. Predicted to be involved in actin cytoskeleton organization; heart development; and muscle structure development. Predicted to be part of filamentous actin. Predicted to be active in Z disc; adherens junction; and stress fiber. Is expressed in several structures, including anterior axial hypoblast; digestive system; epidermis; nervous system; and yolk syncytial layer. Orthologous to human PDLIM1 (PDZ and LIM domain 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 8 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:7158364 (15 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR001478 | PDZ domain |
| Domain | IPR001781 | Zinc finger, LIM-type |
| Domain | IPR006643 | Zasp-like motif |
| Domain | IPR028537 | PDZ and LIM domain protein 1, LIM domain |
| Domain | IPR031847 | PDZ and LIM domain protein 1-4/Zasp-like, middle domain |
| Family | IPR050604 | PDZ and LIM domain-containing |
| Homologous_superfamily | IPR036034 | PDZ superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | PDZ and LIM domain-containing | PDZ and LIM domain protein 1-4/Zasp-like, middle domain | PDZ and LIM domain protein 1, LIM domain | PDZ domain | PDZ superfamily | Zasp-like motif | Zinc finger, LIM-type |
|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:Q567X7 | InterPro | 322 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
pdlim1-201
(1)
|
Ensembl | 1,724 nt | ||
| mRNA |
pdlim1-202
(1)
|
Ensembl | 378 nt | ||
| mRNA |
pdlim1-203
(1)
|
Ensembl | 883 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers