header logo image header logo text
Downloads Login
Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-030131-5007
Your Input Welcome
We welcome your input and comments. Please use this form to recommend updates to the information in ZFIN. We appreciate as much detail as possible and references as appropriate. We will review your comments promptly.
Please check the highlighted fields and try again.
Thank you for submitting comments. Your input has been emailed to ZFIN curators who may contact you if additional information is required.
Oops. Something went wrong. Please try again later.
Gene Name: coiled-coil domain containing 28A
Gene Symbol: ccdc28a    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: wu:fe24b05, zgc:63962

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 17 Mapping Details/Browsers
Description: Predicted to have Rho guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of Rho protein signal transduction. Orthologous to human CCDC28A (coiled-coil domain containing 28A).
Genome Resources: Alliance (1), Gene:326808 (1), Ensembl(GRCz11):ENSDARG00000091471 (1)
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:63962]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la027852Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa23127 Point Mutation Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa42970 Point Mutation Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
    • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH ccdc28a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH ccdc28a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component cellular_component (more)
    Molecular Function guanyl-nucleotide exchange factor activity (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000219 (1)
  • InterPro:IPR001810 (1)
  • InterPro:IPR007858 (1)
  • InterPro:IPR011993 (1)
  • InterPro:IPR025271 (1)
  • InterPro:IPR025592 (1)
  • InterPro:IPR035899 (1)
  • InterPro:IPR036047 (1)
    		•
  • PROSITE:PS50010 (1)
    		•
  • Pfam:PF00621 (1)
  • Pfam:PF00646 (1)
  • Pfam:PF05186 (1)
  • Pfam:PF13270 (1)
  • Pfam:PF14252 (1)
    		•
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA ccdc28a-201 (1)    Ensembl 1279
    Select Tool
    ccdc28a-203 (1)    Ensembl 731
    Select Tool
    ccdc28a-204 (1)    Ensembl 724
    Select Tool
    ccdc28a-205 (1)    Ensembl 735
    Select Tool
    ncRNA ccdc28a-004 (1)    Ensembl 823
    Select Tool
    Browsers: UCSC, NCBI, Ensembl, ZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM ccdc28aNo data available
    MARKER RELATIONSHIPS
    ccdc28aContained in: [BAC] CH211-132F19 (1) (order this)
    ccdc28aEncodes: [EST] fe24b05, wz1078 (1)
    [cDNA] MGC:63962 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_199748 (1) 1263bp
    Select Tool
    Genomic GenBank:BX323819 (1) 178951bp
    Select Tool
    Polypeptide UniProtKB:F1QUJ5 (1) 956aa
    Select Tool
    Sequence Clusters UniGene:80134 (1)
    Sequence Information (all 18)
    ORTHOLOGY for ccdc28a (Chr: 17)
    CITATIONS (22)