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ZIRC
ZFIN ID: ZDB-GENE-030131-5007
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Gene Name: coiled-coil domain containing 28A
Gene Symbol: ccdc28a
Sequence Ontology ID : SO:0000704

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Previous Names: wu:fe24b05, zgc:63962

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(Including Attributions)
Location: Chr: 17 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Orthologous to human CCDC28A (coiled-coil domain containing 28A).
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:63962]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la027852Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa23127 Point Mutation Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa42970 Point Mutation Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
    • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH ccdc28a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH ccdc28a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of Rho protein signal transduction (more)
    Cellular Component cellular_component (more)
    Molecular Function Rho guanyl-nucleotide exchange factor activity (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000219 (1)
  • InterPro:IPR001810 (1)
  • InterPro:IPR007858 (1)
  • InterPro:IPR011993 (1)
  • InterPro:IPR025271 (1)
  • InterPro:IPR025592 (1)
  • InterPro:IPR035899 (1)
  • InterPro:IPR036047 (1)
    		•
  • PROSITE:PS50010 (1)
    		•
  • Pfam:PF00621 (1)
  • Pfam:PF00646 (1)
  • Pfam:PF05186 (1)
  • Pfam:PF13270 (1)
  • Pfam:PF14252 (1)
    		•
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA ccdc28a-004 (1) 823
    Select Tool
    mRNA ccdc28a-201 (1) 1279
    Select Tool
    ccdc28a-203 (1) 731
    Select Tool
    ccdc28a-204 (1) 724
    Select Tool
    ccdc28a-205 (1) 735
    Select Tool
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM ccdc28a No data available
    MARKER RELATIONSHIPS
    ccdc28aContained in: [BAC] CH211-132F19 (1) (order this)
    ccdc28aEncodes: [EST] fe24b05, wz1078 (1)
    [cDNA] MGC:63962 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_199748 (1) 1263bp
    Select Tool
    Genomic GenBank:BX323819 (1) 178951bp
    Select Tool
    Polypeptide UniProtKB:F1QUJ5 (1) 956aa
    Select Tool
    Sequence Clusters UniGene:80134 (1)
    Sequence Information (all 18)
    OTHER ccdc28a GENE PAGES
  • Alliance (1)
  • Gene:326808 (1)
  • VEGA:OTTDARG00000022836 (1)
  • Ensembl(GRCz11):ENSDARG00000091471 (1)
    • ORTHOLOGY for ccdc28a (Chr: 17)
    CITATIONS (22)