Gene

ss18

ID
ZDB-GENE-030131-4867
Name
SS18 subunit of BAF chromatin remodeling complex
Symbol
ss18 Nomenclature History
Previous Names
  • wu:fe02e04
  • zgc:55812
Type
protein_coding_gene
Location
Chr: 2 Mapping Details/Browsers
Description
Predicted to have transcription coactivator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to localize to nucleus. Human ortholog(s) of this gene implicated in synovial sarcoma. Orthologous to human SS18 (SS18 subunit of BAF chromatin remodeling complex).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Thisse et al., 2004
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With ss18 Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
Sarcoma, synovial
Associated With ss18 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR007726 SS18, N-terminal
Domain Details Per Protein
Protein Length SS18, N-terminal
UniProtKB:A0A0R4IPF8 327
UniProtKB:Q802V1 368
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA ss18-201 (1) Ensembl 2,085 nt
mRNA ss18-202 (1) Ensembl 1,962 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations