Gene

rpap2

ID

ZDB-GENE-050522-420

Name

RNA polymerase II associated protein 2

Symbol

rpap2 Nomenclature History

Previous Names

im:7149428
wu:fc90e06
zgc:112291

Type

protein_coding_gene

Location

Chr: 2 Mapping Details/Browsers

Description

Predicted to have RNA polymerase II CTD heptapeptide repeat phosphatase activity. Predicted to be involved in dephosphorylation of RNA polymerase II C-terminal domain and snRNA transcription. Predicted to localize to RNA polymerase II, holoenzyme and cytoplasm. Orthologous to human RPAP2 (RNA polymerase II associated protein 2).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

IMAGE:7149428 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rpap2 Human Ortholog

No data available

Associated With rpap2 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR007308	Rtr1/RPAP2 domain
Family	IPR039693	Rtr1/RPAP2
Homologous_superfamily	IPR038534	Rtr1/RPAP2 domain superfamily

Domain Details Per Protein

Protein	Length	Rtr1/RPAP2	Rtr1/RPAP2 domain	Rtr1/RPAP2 domain superfamily
UniProtKB:B0UYH6 InterPro	601
UniProtKB:A0A8M2BIG0 InterPro	528
UniProtKB:A0A8M1N6W7 InterPro	324

Transcripts

Genome Browsers

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	rpap2-201 (1) Ensembl	Ensembl		2,539 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations