Gene

phf12a

ID

ZDB-GENE-030131-3876

Name

PHD finger protein 12a

Symbol

phf12a Nomenclature History

Previous Names

fc56f04
wu:cegs2807
wu:fc56f04

Type

protein_coding_gene

Location

Chr: 10 Mapping Details/Browsers

Description

Predicted to have transcription coregulator activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to localize to Sin3-type complex. Orthologous to human PHF12 (PHD finger protein 12).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

8 figures from Rauch et al., 2003

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With phf12a Human Ortholog

No data available

Associated With phf12a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR019786	Zinc finger, PHD-type, conserved site
Domain	IPR000253	Forkhead-associated (FHA) domain
Domain	IPR001965	Zinc finger, PHD-type
Domain	IPR019787	Zinc finger, PHD-finger
Domain	IPR031966	PHD finger protein 12, MRG binding domain
Homologous_superfamily	IPR008984	SMAD/FHA domain superfamily
Homologous_superfamily	IPR011011	Zinc finger, FYVE/PHD-type
Homologous_superfamily	IPR013083	Zinc finger, RING/FYVE/PHD-type
Homologous_superfamily	IPR038098	PHD finger protein 12, MRG binding domain superfamily

Domain Details Per Protein

Protein	Length	Forkhead-associated (FHA) domain	PHD finger protein 12, MRG binding domain	PHD finger protein 12, MRG binding domain superfamily	SMAD/FHA domain superfamily	Zinc finger, FYVE/PHD-type	Zinc finger, PHD-finger	Zinc finger, PHD-type	Zinc finger, PHD-type, conserved site	Zinc finger, RING/FYVE/PHD-type
UniProtKB:E7EXI6 InterPro	941

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	phf12a-201 (1) Ensembl	Ensembl	3,738 nt	Select Tool
mRNA	phf12a-203 (1) Ensembl	Ensembl	2,706 nt	Select Tool ZFIN BLAST
mRNA	phf12a-204 (1) Ensembl	Ensembl	1,008 nt	Select Tool ZFIN BLAST
ncRNA	phf12a-002 (1) Ensembl	Ensembl	979 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations