Gene

si:ch211-262i1.5

ID
ZDB-GENE-030131-3152
Name
si:ch211-262i1.5
Symbol
si:ch211-262i1.5 Nomenclature History
Previous Names
  • fc28f08
  • wu:fc28f08 (1)
Type
protein_coding_gene
Location
Chr: 11 Mapping Details/Browsers
Description
Predicted to enable DNA binding activity and metal ion binding activity.
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
No data available
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa8736Allele with one point mutationUnknownPremature StopENU
European Zebrafish Resource Center (EZRC) (order this)
Zebrafish International Resource Center (ZIRC) (order this)
sa14951Allele with one point mutationUnknownPremature StopENU
European Zebrafish Resource Center (EZRC) (order this)
Zebrafish International Resource Center (ZIRC) (order this)
sa35051Allele with one point mutationUnknownPremature StopENU
Zebrafish International Resource Center (ZIRC) (order this)
European Zebrafish Resource Center (EZRC) (order this)
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Sequence Targeting Reagents
No data available
Human Disease
Associated With si:ch211-262i1.5 Human Ortholog
No data available
Associated With si:ch211-262i1.5 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR006612 THAP-type zinc finger
Domain IPR027805 Transposase, Helix-turn-helix domain
Domain IPR027806 Harbinger transposase-derived nuclease domain
Homologous_superfamily IPR038441 THAP-type zinc finger superfamily
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Domain Details Per Protein
Protein Additional Resources Length Harbinger transposase-derived nuclease domain THAP-type zinc finger THAP-type zinc finger superfamily Transposase, Helix-turn-helix domain
UniProtKB:A0A8M9PVW1 InterPro 483
UniProtKB:A0A8M9Q3Q6 InterPro 483
UniProtKB:E7EZT8 InterPro 485
UniProtKB:A0A8N7T7U7 InterPro 485
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 11
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA si:ch211-262i1.5-201 (1)
Ensembl
Ensembl 1,729 nt
ZFIN BLAST
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH211-262I1ZFIN Curated Data
EncodesESTfc28f08
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Sequences
Type Accession # Sequence Length (nt/aa) Analysis
RNARefSeq:XM_021479951 (1)1706 nt
ZFIN BLASTNCBI BLASTEnsemblUCSC BLAT
GenomicGenBank:CR847939 (1)181988 nt
MegaBLASTEnsembl
PolypeptideUniProtKB:A0A8N7T7U7 (1)485 aa
ZFIN BLASTSIB BLASTEnsembl Protein Blast
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
No data available
Citations
TSV
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Your Input Welcome
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