Gene
puf60a
- ID
- ZDB-GENE-030131-2891
- Name
- poly-U binding splicing factor a
- Symbol
- puf60a Nomenclature History
- Previous Names
-
- fc21a05
- wu:fc21a05 (1)
- wu:fi43a08
- Type
- protein_coding_gene
- Location
- Chr: 2 Mapping Details/Browsers
- Description
- Predicted to have RNA binding activity. Is expressed in central nervous system and pharynx. Orthologous to human PUF60 (poly(U) binding splicing factor 60).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 12 figures from Rauch et al., 2003
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| Verheij syndrome | 615583 |
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000504 | RNA recognition motif domain |
| Domain | IPR003954 | RNA recognition motif domain, eukaryote |
| Domain | IPR034209 | PUF60, RNA recognition motif 1 |
| Domain | IPR034211 | PUF60, RNA recognition motif 2 |
| Domain | IPR034212 | PUF60, RNA recognition motif 3 |
| Family | IPR006532 | Poly-U binding splicing factor, PUF60-like |
| Family | IPR051974 | Poly(U)-binding-splicing regulator |
| Homologous_superfamily | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| Homologous_superfamily | IPR035979 | RNA-binding domain superfamily |
Domain Details Per Protein
| Protein | Length | Nucleotide-binding alpha-beta plait domain superfamily | Poly-U binding splicing factor, PUF60-like | Poly(U)-binding-splicing regulator | PUF60, RNA recognition motif 1 | PUF60, RNA recognition motif 2 | PUF60, RNA recognition motif 3 | RNA-binding domain superfamily | RNA recognition motif domain | RNA recognition motif domain, eukaryote |
|---|---|---|---|---|---|---|---|---|---|---|
|
UniProtKB:A0A8M2BAZ4
|
550 | |||||||||
|
UniProtKB:F1QZ57
|
552 | |||||||||
|
UniProtKB:A0A8M2BAV4
|
288 | |||||||||
|
UniProtKB:A0A8M9QNK1
|
352 | |||||||||
|
UniProtKB:A0A2R8QFM1
|
538 | |||||||||
|
UniProtKB:A0A8M9Q9Z9
|
371 | |||||||||
|
UniProtKB:A0A8M2BAQ4
|
533 | |||||||||
|
UniProtKB:A8E4R7
|
518 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
puf60a-201
(1)
|
Ensembl | 5,284 nt | ||
| mRNA |
puf60a-202
(1)
|
Ensembl | 930 nt | ||
| mRNA |
puf60a-204
(1)
|
Ensembl | 795 nt | ||
| mRNA |
puf60a-205
(1)
|
Ensembl | 1,095 nt | ||
| mRNA |
puf60a-206
(1)
|
Ensembl | 866 nt | ||
| mRNA |
puf60a-208
(1)
|
Ensembl | 769 nt | ||
| mRNA |
puf60a-209
(1)
|
Ensembl | 842 nt | ||
| mRNA |
puf60a-210
(1)
|
Ensembl | 2,188 nt | ||
| mRNA |
puf60a-212
(1)
|
Ensembl | 901 nt | ||
| mRNA |
puf60a-213
(1)
|
Ensembl | 5,310 nt | ||
| mRNA |
puf60a-214
(1)
|
Ensembl | 5,320 nt | ||
| mRNA |
puf60a-215
(1)
|
Ensembl | 5,430 nt | ||
| ncRNA |
puf60a-007
(1)
|
Ensembl | 807 nt | ||
| ncRNA |
puf60a-008
(1)
|
Ensembl | 879 nt | ||
| ncRNA |
puf60a-009
(1)
|
Ensembl | 630 nt |
Interactions and Pathways
No data available
Plasmids
No data available