Gene

arvcfb

ID

ZDB-GENE-060526-60

Name

ARVCF delta catenin family member b

Symbol

arvcfb Nomenclature History

Previous Names

si:ch211-173n20.1 (1)
wu:fc11a08

Type

protein_coding_gene

Location

Chr: 5 Mapping Details/Browsers

Description

Predicted to have cadherin binding activity. Predicted to be involved in cell-cell adhesion and cell-cell junction assembly. Predicted to localize to several cellular components, including adherens junction; nucleus; and plasma membrane. Human ortholog(s) of this gene implicated in DiGeorge syndrome. Orthologous to human ARVCF (ARVCF delta catenin family member).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from Hsu et al., 2012

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With arvcfb Human Ortholog

No data available

Associated With arvcfb Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR028435	Plakophilin/Delta catenin
Homologous_superfamily	IPR011989	Armadillo-like helical
Homologous_superfamily	IPR016024	Armadillo-type fold
Repeat	IPR000225	Armadillo

Domain Details Per Protein

Protein	Length	Armadillo	Armadillo-like helical	Armadillo-type fold	Plakophilin/Delta catenin
UniProtKB:A0A8M3ASI4 InterPro	1009
UniProtKB:A0A8M3ASI2 InterPro	1048
UniProtKB:A0A8M9PXY3 InterPro	966
UniProtKB:A0A8M9QE79 InterPro	998
UniProtKB:A2BGY1 InterPro	986
UniProtKB:A0A8M3AZP7 InterPro	984
UniProtKB:A0A8M9PKF3 InterPro	1041
UniProtKB:A0A8M3B9P1 InterPro	1016
UniProtKB:A0A8M3ASE0 InterPro	1030
UniProtKB:A0A8M3AZP1 InterPro	1032
UniProtKB:A0A8M3B2J5 InterPro	1038
UniProtKB:A0A8M3B2J8 InterPro	1008
UniProtKB:A0A8M9Q3M5 InterPro	1002
UniProtKB:A0A8M9PXX9 InterPro	1014
UniProtKB:A0A8M9Q8X2 InterPro	992
UniProtKB:A0A8M3ASE4 InterPro	938

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	arvcfb-201 (1) Ensembl	Ensembl	2,961 nt	Select Tool ZFIN BLAST
mRNA	arvcfb-202 (1) Ensembl	Ensembl	575 nt	Select Tool
mRNA	arvcfb-203 (1) Ensembl	Ensembl	679 nt	Select Tool
mRNA	arvcfb-204 (1) Ensembl	Ensembl	9,165 nt	Select Tool
mRNA	arvcfb-206 (1) Ensembl	Ensembl	774 nt	Select Tool
mRNA	arvcfb-207 (1) Ensembl	Ensembl	763 nt	Select Tool
mRNA	arvcfb-208 (1) Ensembl	Ensembl	2,915 nt	Select Tool ZFIN BLAST
mRNA	arvcfb-209 (1) Ensembl	Ensembl	2,808 nt	Select Tool ZFIN BLAST
ncRNA	arvcfb-003 (1) Ensembl	Ensembl	610 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations