Gene

si:dkey-33c12.4

ID
ZDB-GENE-030131-2527
Name
si:dkey-33c12.4
Symbol
si:dkey-33c12.4 Nomenclature History
Previous Names
  • fc10f01
  • si:ch211-243o19.6 (1)
  • wu:fc10f01
Type
protein_coding_gene
Location
Chr: 13 Mapping Details/Browsers
Description
Predicted to enable RNA binding activity and metal ion binding activity. Orthologous to human TTC31 (tetratricopeptide repeat domain 31).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
No data available
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa22229Allele with one point mutationUnknownSplice SiteENU
Zebrafish International Resource Center (ZIRC) (order this)
European Zebrafish Resource Center (EZRC) (order this)
sa35424Allele with one point mutationUnknownPremature StopENU
Zebrafish International Resource Center (ZIRC) (order this)
European Zebrafish Resource Center (EZRC) (order this)
sa42140Allele with one point mutationUnknownPremature StopENU
Zebrafish International Resource Center (ZIRC) (order this)
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Sequence Targeting Reagents
No data available
Human Disease
Associated With si:dkey-33c12.4 Human Ortholog
No data available
Associated With si:dkey-33c12.4 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR000504 RNA recognition motif domain
Domain IPR000571 Zinc finger, CCCH-type
Homologous_superfamily IPR009060 UBA-like superfamily
Homologous_superfamily IPR011990 Tetratricopeptide-like helical domain superfamily
Homologous_superfamily IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
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Domain Details Per Protein
Protein Additional Resources Length Nucleotide-binding alpha-beta plait domain superfamily RNA-binding domain superfamily RNA recognition motif domain Tetratricopeptide-like helical domain superfamily Tetratricopeptide repeat UBA-like superfamily Zinc finger, CCCH-type
UniProtKB:B8A599 InterPro 631
UniProtKB:A0A8M9QFE8 InterPro 648
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 13
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA si:dkey-33c12.4-201 (1)
Ensembl
Ensembl 2,764 nt
ZFIN BLAST
mRNA si:dkey-33c12.4-202 (1)
Ensembl
Ensembl 367 nt
ZFIN BLAST
mRNA si:dkey-33c12.4-204 (1)
Ensembl
Ensembl 640 nt
ZFIN BLAST
mRNA si:dkey-33c12.4-205 (1)
Ensembl
Ensembl 524 nt
ZFIN BLAST
ncRNA si:dkey-33c12.4-002 (1)
Ensembl
Ensembl 523 nt
ZFIN BLAST
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACDKEY-33C12ZFIN Curated Data
Contained inBACDKEY-265C15ZFIN Curated Data
EncodesESTfc10f01
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Sequences
Type Accession # Sequence Length (nt/aa) Analysis
RNARefSeq:NM_001161599 (1)1896 nt
ZFIN BLASTNCBI BLASTEnsemblUCSC BLAT
GenomicGenBank:BX901922 (1)242350 nt
MegaBLAST
PolypeptideUniProtKB:A0A8M9QFE8 (1)648 aa
ZFIN BLASTSIB BLASTEnsembl Protein Blast
Orthology
Comparative Orthology
Alliance
No data available
Citations
TSV
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