Gene

si:dkey-34m19.3

ID
ZDB-GENE-030131-2206
Name
si:dkey-34m19.3
Symbol
si:dkey-34m19.3 Nomenclature History
Previous Names
  • fb99f06
  • wu:fb99f06 (1)
Type
protein_coding_gene
Location
Chr: 6 Mapping Details/Browsers
Description
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus.
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
No data available
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa2300Allele with one point mutationUnknownPremature StopENU
sa20656Allele with one point mutationUnknownPremature StopENU
Zebrafish International Resource Center (ZIRC) (order this)
European Zebrafish Resource Center (EZRC) (order this)
sa20657Allele with one point mutationUnknownSplice SiteENU
Zebrafish International Resource Center (ZIRC) (order this)
European Zebrafish Resource Center (EZRC) (order this)
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Sequence Targeting Reagents
No data available
Human Disease
Associated With si:dkey-34m19.3 Human Ortholog
No data available
Associated With si:dkey-34m19.3 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR006612 THAP-type zinc finger
Domain IPR013087 Zinc finger C2H2-type
Homologous_superfamily IPR036236 Zinc finger C2H2 superfamily
Homologous_superfamily IPR038441 THAP-type zinc finger superfamily
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Domain Details Per Protein
Protein Additional Resources Length THAP-type zinc finger THAP-type zinc finger superfamily Zinc finger C2H2 superfamily Zinc finger C2H2-type
UniProtKB:A0A8M2BD27 InterPro 582
UniProtKB:A0A8M2BD67 InterPro 545
UniProtKB:A0A8M6Z6U1 InterPro 582
UniProtKB:A0A8M6YZN5 InterPro 545
UniProtKB:A0A8M2BD35 InterPro 582
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 6
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA si:dkey-34m19.3-201 (1)
Ensembl
Ensembl 2,040 nt
ZFIN BLAST
mRNA si:dkey-34m19.3-202 (1)
Ensembl
Ensembl 2,142 nt
ZFIN BLAST
mRNA si:dkey-34m19.3-203 (1)
Ensembl
Ensembl 2,159 nt
ZFIN BLAST
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACDKEY-34M19ZFIN Curated Data
EncodesESTfb99f06
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Sequences
Type Accession # Sequence Length (nt/aa) Analysis
RNARefSeq:XM_002662300 (1)2037 nt
ZFIN BLASTNCBI BLASTEnsemblUCSC BLAT
GenomicGenBank:BX936397 (1)150369 nt
MegaBLASTEnsembl
PolypeptideUniProtKB:F1R8F3 (1)619 aa
ZFIN BLASTSIB BLASTEnsembl Protein Blast
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
No data available
Citations
TSV
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Your Input Welcome
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