Gene

hnrnpaba

ID

ZDB-GENE-030131-185

Name

heterogeneous nuclear ribonucleoprotein A/Ba

Symbol

hnrnpaba Nomenclature History

Previous Names

hnrnpab
hnrpab (1)
hm:zeh1271 (1)
sqd-likeA (1)
wu:fa18g02
wu:fb07b06
wu:fb16c05
zeh1271 (1)

Type

protein_coding_gene

Location

Chr: 14 Mapping Details/Browsers

Description

Predicted to have RNA binding activity and sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of RNA metabolic process. Predicted to localize to nucleoplasm and ribonucleoprotein complex. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Is expressed in several structures, including EVL; digestive system; fin; nervous system; and periderm. Orthologous to human HNRNPAB (heterogeneous nuclear ribonucleoprotein A/B).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

15 figures from 4 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:55953 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With hnrnpaba Human Ortholog

No data available

Associated With hnrnpaba Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR012956	CARG-binding factor, N-terminal
Domain	IPR034846	hnRNPAB, RNA recognition motif 1
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	CARG-binding factor, N-terminal	hnRNPAB, RNA recognition motif 1	Nucleotide-binding alpha-beta plait domain superfamily	RNA-binding domain superfamily	RNA recognition motif domain
UniProtKB:A0A8M2BHF1 InterPro	331
UniProtKB:Q6NYU8 InterPro	340

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	hnrnpaba-201 (1) Ensembl	Ensembl	825 nt	Select Tool
mRNA	hnrnpaba-202 (1) Ensembl	Ensembl	4,413 nt	Select Tool
mRNA	hnrnpaba-204 (1) Ensembl	Ensembl	689 nt	Select Tool
mRNA	hnrnpaba-205 (1) Ensembl	Ensembl	765 nt	Select Tool
mRNA	hnrnpaba-206 (1) Ensembl	Ensembl	1,285 nt	Select Tool
ncRNA	hnrnpaba-003 (1) Ensembl	Ensembl	787 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations