Gene

plxnc1

ID

ZDB-GENE-030131-1620

Name

plexin C1

Symbol

plxnc1 Nomenclature History

Previous Names

fb76c04
si:dkeyp-90a8.2
wu:fb76c04

Type

protein_coding_gene

Location

Chr: 4 Mapping Details/Browsers

Description

Predicted to enable semaphorin receptor activity. Acts upstream of or within regulation of GTPase activity. Predicted to be located in membrane. Orthologous to human PLXNC1 (plexin C1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With plxnc1 Human Ortholog

No data available

Associated With plxnc1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001627	Sema domain
Domain	IPR002909	IPT domain
Domain	IPR013548	Plexin, cytoplasmic RasGAP domain
Domain	IPR016201	PSI domain
Domain	IPR046800	Plexin, cytoplasmic RhoGTPase-binding domain
Family	IPR031148	Plexin family
Homologous_superfamily	IPR008936	Rho GTPase activation protein
Homologous_superfamily	IPR013783	Immunoglobulin-like fold
Homologous_superfamily	IPR015943	WD40/YVTN repeat-like-containing domain superfamily
Homologous_superfamily	IPR036352	Sema domain superfamily
Repeat	IPR002165	Plexin repeat

Domain Details Per Protein

Protein	Length	Immunoglobulin-like fold	IPT domain	Plexin, cytoplasmic RasGAP domain	Plexin, cytoplasmic RhoGTPase-binding domain	Plexin family	Plexin repeat	PSI domain	Rho GTPase activation protein	Sema domain	Sema domain superfamily	WD40/YVTN repeat-like-containing domain superfamily
UniProtKB:A0A8M3ARP5 InterPro	1480

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	plxnc1-201 (1) Ensembl	Ensembl	3,265 nt	Select Tool ZFIN BLAST
mRNA	plxnc1-202 (1) Ensembl	Ensembl	3,171 nt	Select Tool ZFIN BLAST
mRNA	plxnc1-203 (1) Ensembl	Ensembl	1,963 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations